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Differentially Expressed Proteins Implicated in Grain Filling at Early Ripening Stage of Rice: A Proteomic Study

Research Abstract

Grain filling is a pivotal grain weight determinant factor and has a great impact on rice yield potential. High grain weight was attributed to a high grain-filling rate. Proteomic analysis during the early ripening stage of rice grains from two cultivars that possess contrasting phenotypes in grain-filling rates was performed to identify proteins associated with high grain-filling rates. Two hundred and nineteen differentially expressed proteins (DEPs) were identified from the grain of two selected cultivars. We observed six more abundant enzymes involved in starch and sucrose metabolism during rice grain filling in the high grain-filling rate cultivar X42. Gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that most of the identified DEPs during grain filling were implicated in physiological and biochemical processes. These processes include carbohydrate metabolism, energy metabolism, secondary metabolites metabolism, and amino acids metabolism. Besides, most of those identified DEPs are differentially expressed in the two rice cultivars during grain filling. These findings indicate the essential roles of DEPs in rice grain development. During the grain-filling stage, starch, sucrose, fatty acids, and amino acids biosynthesis were more active and their metabolisms were also significantly enriched. Protein–protein interactions indicate the implication of proteins in several biological processes, for instance, carbohydrate metabolism, fatty acid metabolism, energy metabolism, and secondary metabolites biosynthesis. Data from our study provided valuable information about carbohydrate and amino acids biosynthesis, transport, and their metabolism in two genotypically grain filling.

Research Authors
Jiana Chen, Fangbo Cao, Mohammed Albaqami, Min Huang, Salah F. Abou-Elwafa
Research Date
Research Department
Research Journal
Journal of Plant Growth Regulation
Research Pages
1-16
Research Publisher
Springer
Research Rank
Q1
Research Website
https://link.springer.com/article/10.1007/s00344-021-10514-z
Research Year
2021

ZmERF21 directly regulates hormone signaling and stress‐responsive gene expression to influence drought tolerance in maize seedlings

Research Abstract

Drought stress adversely impacts crop development and yield. Maize frequently encounters drought stress during its life cycle. Improvement of drought tolerance is a priority of maize breeding programs. Here, we identified a novel transcription factor encoding gene, APETALA2 (AP2)/Ethylene response factor (ERF), which is tightly associated with drought tolerance in maize seedlings. ZmERF21 is mainly expressed in the root and leaf and it can be highly induced by polyethylene glycol treatment. Genetic analysis showed that the zmerf21 mutant plants displayed a reduced drought tolerance phenotype, accompanied by phenotypical and physiological changes that are commonly observed in drought conditions. Overexpression of ZmERF21 in maize significantly increased the chlorophyll content and activities of antioxidant enzymes under drought conditions. RNA-Seq and DNA affinity purification sequencing analysis further revealed that ZmERF21 may directly regulate the expression of genes related to hormone (ethylene, abscisic acid) and Ca signaling as well as other stress-response genes through binding to the promoters of potential target genes. Our results thereby provided molecular evidence of ZmERF21 is involved in the drought stress response of maize.

 
Research Authors
Zhiyong Wang, Xiang Zhao, Zhenzhen Ren, Salah Fatouh Abou‐Elwafa, Xiaoyu Pu, Yingfang Zhu, Dandan Dou, Huihui Su, Haiyang Cheng, Zhixue Liu, Yanhui Chen, Ertao Wang, Ruixin Shao, Lixia Ku
Research Date
Research Department
Research Journal
Plant, Cell & Environment
Research Pages
1-17
Research Publisher
Wiley Online Library
Research Rank
Q1
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1111/pce.14243
Research Year
2021

ZmCCT regulates photoperiod-dependent flowering and response to stresses in maize

Research Abstract

Background

Appropriate flowering time is very important to the success of modern agriculture. Maize (Zea mays L.) is a major cereal crop, originated in tropical areas, with photoperiod sensitivity. Which is an important obstacle to the utilization of tropical/subtropical germplasm resources in temperate regions. However, the study on the regulation mechanism of photoperiod sensitivity of maize is still in the early stage. Although it has been previously reported that ZmCCT is involved in the photoperiod response and delays maize flowering time under long-day conditions, the underlying mechanism remains unclear.

Results

Here, we showed that ZmCCT overexpression delays flowering time and confers maize drought tolerance under LD conditions. Implementing the Gal4-LexA/UAS system identified that ZmCCT has a transcriptional inhibitory activity, while the yeast system showed that ZmCCT has a transcriptional activation activity. DAP-Seq analysis and EMSA indicated that ZmCCT mainly binds to promoters containing the novel motifs CAAAAATC and AAATGGTC. DAP-Seq and RNA-Seq analysis showed that ZmCCT could directly repress the expression of ZmPRR5 and ZmCOL9, and promote the expression of ZmRVE6 to delay flowering under long-day conditions. Moreover, we also demonstrated that ZmCCT directly binds to the promoters of ZmHY5ZmMPK3ZmVOZ1 and ZmARR16 and promotes the expression of ZmHY5 and ZmMPK3, but represses ZmVOZ1 and ZmARR16 to enhance stress resistance. Additionally, ZmCCT regulates a set of genes associated with plant development.

Conclusions

ZmCCT has dual functions in regulating maize flowering time and stress response under LD conditions. ZmCCT negatively regulates flowering time and enhances maize drought tolerance under LD conditions. ZmCCT represses most flowering time genes to delay flowering while promotes most stress response genes to enhance stress tolerance. Our data contribute to a comprehensive understanding of the regulatory mechanism of ZmCCT in controlling maize flowering time and stress response.

Research Authors
Huihui Su, Jiachen Liang, Salah Fatouh Abou-Elwafa, Haiyang Cheng, Dandan Dou, Zhenzhen Ren, Jiarong Xie, Zhihui Chen, Fengran Gao, Lixia Ku, Yanhui Chen
Research Date
Research Department
Research Journal
BMC Plant Biology
Research Pages
1-15
Research Publisher
Springer
Research Rank
Q1
Research Vol
21
Research Website
https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03231-y
Research Year
2021

Aerenchyma formation in the root of leaf‐vegetable sweet potato: Programmed cell death initiated by ethylene‐mediated H2O2 accumulation

Research Abstract

Sweet potato, commonly planted in Southeast Asia and South America with abundant rainfall, often suffers from waterlogging. The aerenchyma formation in roots is an effective way for plants to facilitate gas exchange. In the present study, tolerant and sensitive varieties, respectively, designated NC1 and C211, were evaluated under water oxygen content at 2.0 mg·L−1 (hypoxia treatment) and 8.0 mg·L−1 (control). The results showed that NC1 variety has a relatively higher root growth rate under low oxygen condition. In NC1 plants, aerenchyma was observed in the mid-section of the main adventitious root and spread to the proximal and distal ends, forming a complete channel in the cortex. However, in C211 plants, the aerenchyma occurred relatively later and could not turn into a whole channel. Ethylene synthesis-related (ACS1ACS4ACS5, etc.) and signal transduction-related (ETR1ERS1EIN2, etc.) genes were upregulated in the NC1 plants and led to changes in the reactive oxygen species-related genes (RBOHASODCAT, etc.) and enzyme activities. It was found that programmed cell death was induced by H2O2 accumulation. A regulatory model of lysigenous aerenchyma formation in the root of sweet potato was constructed. Our study enriches the understanding of the mechanisms of the aerenchyma formation in plants.

 
Research Authors
Rui Pan, Hui Han, Milca Banda Medison, Salah Fatouh Abou‐Elwafa, Yi Liu, Xinsun Yang, Wenying Zhang
Research Date
Research Department
Research Journal
Physiologia Plantarum
Research Pages
2361-2375
Research Publisher
Wiley Online Library
Research Rank
Q1
Research Vol
173
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1111/ppl.13587
Research Year
2021

Effect of Pre- and Post-harvest Treatments on Quality and Storability of "Manfalouty" Pomegranates under Room Temperature

Research Abstract

This study was carried out during 2011 and 2012 seasons on "Manfalouty" pomegranate cv. grown at the experimental orchard of Pomology Department, Faculty of Agriculture, Assiut University. The objectives of this study were examining the effects of pre-harvest spray with CaCl2 (4%) and GA3 (100 ppm) as well as post-harvest treatments with jasmine oil (2.5 cm3 /L), olive oil (2.5 cm3 /L), fiber gard (20 cm3 /L) and wrapping individually fruit with food polyolefin stretch as an improving effect in physicochemical characteristics of "Manfalouty" pomegranate cv. during storage under room temperature (22+5°C). The experiments were set up on split-plot arrangements in complete randomized block design (CRBD), with three replicates, 20 fruits each. According to the obtained results of this study, it could be deduced that pre-harvest spray with GA3 (100 ppm) gave in general, the best results on improving physical and chemical characteristics, followed by CaCl2 (4%) during the two growth seasons, as well as wrapping individually fruits with food polyolefin stretch gave the best quality during shelf-life period, followed by dipping fruits in both jasmine oil or olive oil and fiber gard during fruit storage under room temperature. Therefore, the authors recommended with wrapping individually fruits to keep fruits with good quality during fruit storage under room temperature.

Research Authors
Mostafa, F.M.A.1 ; A.A.B. Masoud1 ; R.A. Ibrahim1 ; Fatma E. Ibraheem2 and Nagwa M. Omar2 1 Pomology Dept., Faculty of Agricultural, Assiut University, Assiut, Egypt. 2Agricultural Research Center, Cairo, Egypt.
Research Date
Research Pages
(76-96)
Research Publisher
Assiut J. Agric. Sci.,
Research Vol
(49) No.(3)
Research Year
2018

Effect of Different Levels of Potassium Fertilizer on Some Physical Properties and Yield Parameters of "Balady" Orange

Research Abstract

This experiment was carried out during two successive seasons 2015 and 2016 on the orchard of Faculty of Agriculture, Assiut University. This study aimed to investigate the effect of potassium sulfate (K) fertilizer at different rates, application times and method of application on yield parameters and fruit properties of old trees of Balady orange cv. The obtained results showed that all K treatments significantly increased the fruit set (%), number of fruits/tree, total yield/tree (kg), fruit weight (g), fruit height and diameter (cm) as compared with control (untreated trees) during both experimental seasons. Moreover, the three times applications and foliar sprays were more effective than twice applications and ground adding of potassium sulfate (K), respectively. The lowest values of these parameters, were recorded in control (untreated trees), while the foliar application of 666 g + 90 mlsprays /tree of potassium sulfate (K) three times gave the highest values during both tested seasons.

Research Authors
El-Mahdy, T.K.; Maha M. Abdel-Salam; R.A. Ibrahim and Manal A. Mahmoud Department of Pomology, Faculty of Agriculture, Assiut University, Assiut, Egypt
Research Date
Research Pages
(97-106)
Research Publisher
Assiut J. Agric. Sci.,
Research Vol
(50) No. (1)
Research Year
2019

Morphological study on ten grape cultivars grown under Assiut climatic conditions

Research Abstract

Investigation was carried out during two consecutive seasons of 2017 and 2018 on ten grape cultivars namely Thomson Seedless ,Ruby Seedless (KingRuby), Red Roomy, Provano ,Black Moskate , Polomino , Rich Baba,Beauty Seedless, Bez El Naka and Bez El Anza grown in the orchard of Pomology Department at the Faculty of Agriculture, Assiut University .This study aimed to evaluate this cultivars regarding vegetative growth .The illustrated data revealed that, the average shoot length progressively increased with increasing the period of time. The last dates of estimation showed a slower increase of shoot length comparing with the earlier dates. Rich Baba and Ruby Seedless represented also higher values (80.41 and 80.1 cm2 , respectively) with no significant differences between them, however Bez-El-Anza exhibited the lowest value (49.54 cm2 ).Provano grape cultivar gave the highest pruning weight followed by Red Roomy and then Bez-El-Naka. The present study revealed that there were great differences between the studied grape cultivars

Research Authors
Mohamed, A.K.A.1,*, M.M. Shaaban1 , R.A. Ibrahim2 , Shamia A. Thabet2 and Karam A. Amein2 1 Department of Pomology, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt; 2 Department of Genetic, Faculty of Agriculture, Assiut University, Assiut
Research Date
Research Pages
pp.: 21-26,
Research Publisher
SVU-International Journal of Agricultural Science
Research Vol
Volume 2 Issue (1)
Research Year
2020

Effect of some natural oils on storage and quality of Balady mandarin fruits

Research Abstract

This study was conducted during two successive seasons 2017 and 2018 to study the effect of some oils immersing on the storability and quality of Balady mandarin (Citrus reticulate L.) fruits during the storage period. The post-harvest treatments were immersed with camphor oil, linen oil and imazalil either singly or in combination. The fruits were stored at cold condition 8±1°C with 85-90% RH. Samples of each treatment were randomly withdrawn monthly for 4 months. The results showed that fruit weight loss %, fruit decay %, total soluble solids %, sugar contents and TSS/acid ratio were significantly increased with prolonging the storage period. On other hand, the advanced storage period induced a gradual decrease of fruit juice percentage, fruits firmness, acidity % and vitamin C. All treatments caused a decrease in fruit weight and fruit decay percentage, fruits firmness, acidity % and vitamin C. Using oils resulted in the least fruit weight loss, whereas, imazalil treatment had the least fruit decay percentage. Also, all treatments improved the fruit quality during the storage period compared control. It could be concluded that oils plus imazalil coating maintained fruit freshness without negative effects of fruit quality parameters and seems to be the proper and ideal treatment to prolong cold storage of Balady mandarin fruits without great reduction in fruit quality.

Research Authors
El-Salhy, A.M., A.A. Badawy, R.A. Ibrahim and M.G. Mohamed* Department of Pomology, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt;
Research Date
Research Pages
pp.: 38-52
Research Publisher
SVU-International Journal of Agricultural Science
Research Vol
Volume 2 Issue (1) ,
Research Year
2020

Using the Organic and Bio-fertilizers as a Partial Substitute for Mineral-N in Williams Banana Orchards

Research Abstract

This study was carried out during two consecutive seasons of 2013/2014 and 2014/2015 on the third and fourth ration of Williams banana plants. The plants are grown in a private Orchard located at Kom Ombo city, Aswan Governorate, Egypt. The compost as an organic fertilizer, enriched with EM or bio-mex was used as a partial replacement for the mineral-N fertilizer. The experiment was set up as a complete randomized block design. The results revealed that using the recommended dose of nitrogen (RDN) via 25% as a mineral source and 25 to 50% as an organic one enriched with 50 or 25% of EM or bio-mex significantly enhanced the length and circumference of pseudostem, leaf area and total leaf area/plant as well as percentage of N, P and K of leaves compared to use the RDN only as a mineral N fertilizer. Also, the N fertilization with a combination of mineral and organic N sources with a bio-fertilizer significantly increased the bunch weight and hand weight consequently increased the yield/plant, as well as improved the fruit quality compared to use the RDN only as a mineral source. The promotion on such growth and fruiting traits was associated with increasing percentage of bio-form from 25 to 50%. The organic fertilizer enriched with bio-mex significantly stimulated these traits more than its use with EM. It is evident that such N fertilization program is very important for the banana fruit production. It improve the nutrient status, yield and fruit quality of banana plants. In addition, it minimizes the production costs and environmental pollution which could be occurred with using chemical fertilizers

Research Authors
Abdel-Hafiz, G.; H.A. Abdel-Galil; Kamelia I.A. Amin and R.A. Ibrahim Pomology Dept., Fac. Agric., Assiut University, Assiut, Egypt.
Research Date
Research Pages
(34-46)
Research Publisher
Assiut J. Agric. Sci., (47) No. (3) 2016 (34-46)
Research Vol
(47) No. (3)
Research Year
2016

Evaluation of Some Seeded Dry Date Palm Grown Under Aswan Climatic Condition

Research Abstract

This study was carried out through 2014 and 2015 seasons to evaluate some seeded dry date palm grown in Aswan governorate, Egypt. Their local name, Abd elnaby 1, 2, 3, El-masry 1, 2, Khaled ebn elwalid, Abas gaffer, Radwan and Ali Aamer date palm compared to Sakkoty cv. which is one of the commercial dry cultivar vegetative traits. Yield components and fruit quality as well as numerical evaluation and molecular genetics were investigated. The obtained results indicated that Ali Aamer date palm type had the highest values of most studied vegetative traits compared to the other studied types. On the other hand, the least values of such traits were recorded of Sakkoty cultivar. El-masry 2 type gave the highest yield components followed by Khaled ebn elwalid and Radwan types, whereas, Abd elnaby 1 gave the least one compared to other studied types. No significant difference was found among Abd elnaby 2, Ali Aamer and Sakkoty cultivar. Khaled ebn elwalid type had the highest values of fruit quality followed by El-masry and Abas gaffer types, whereas, Sakkoty cultivar gave the lowest one compared to the other studied types. As the numerical evaluation of date palm types, it could be arranged in a descendingly order as follows: Khaled ebn elwalid (86.2), El-masry 2 (84.4), Ali Aamer (81.5), Abas gaffer (80.9), Radwan (77.9), El-masry 1 (77.3), Abd elnaby 3 (76.8), Abd elnaby 2 (72.7), Sakkoty (68.2) and Abd elnaby 1 (67.7 units). The ISSR data were used to estimate the genetic similarity among the nine date palm strains by using UPGMA computer analysis. The highest similarity index (1.0) was recorded between Abd elnaby 1 and Abas gaffer, while the lowest similarity index was detected (0.0) between El-masry 2 and Ali Aamer. A dendrogram for the genetic relationship among the nine date palm strains was found. These results revealed that seeded date palm named El-masry 2, Abas gaffer, Khaled ebn elwalid, Ali Amer and Radwan are considered promising to be new strains to obtain a high yield with good fruit quality compared to Sakkoty date palm cultivar

Research Authors
El-Salhy, A.M.1 ; R.A. Ibrahim1 ; E.G. Gadalla2 and H.K.H. Khalil2 1 Pomoloty Dept., Fac. Agric., Assiut University, Assiut, Egypt 2 Central Laboratory for Date Palm Researches and Development, Agric. Res.
Research Date
Research Pages
(136-155)
Research Publisher
Assiut J. Agric. Sci., (47) No. (4) 2016 (136-155)
Research Vol
(47) No. (4)
Research Year
2016
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