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Synthesis of Regio- and Stereoselectively Deuterium-Labelled Derivatives of L-Glutamate Semialdehyde for Studies on Carbapenem Biosynthesis

Research Abstract
L-Glutamate semialdehyde (L-GSA) is an intermediate in biosynthetic pathways including those leading to the carbapenem antibiotics. We describe studies on asymmetric deuteration or hydrogenation of appropriate didehydro-amino acid precursors for the stereoselective synthesis of C-2- and/or C-3-[2H]-labelled L-GSA suitable for use in mechanistic studies. Regioselective deuterium incorporation into the 5-position of L-GSA was achieved using a labelled form of the Schwartz reagent (Cp2Zr2HCl). 4,4-Dideuterated and fully backbone deuterated L-GSAs were prepared. The application of the labelled L-GSA derivatives to biosynthetic studies was exemplified by the chemo-enzymatic preparation of selectively deuterated trans-carboxymethylprolines using two different carboxymethylproline synthases (CarB and ThnE), enzymes that catalyse early steps in the biosynthesis of two carbapenems: (5R)-carbapenem-3-carboxylate and thienamycin, respectively.
Research Authors
Christian Ducho, Refaat B. Hamed, Edward T. Batchelar, John L. Sorensen, Barbara Odell, Christopher J. Schofield
Research Department
Research Journal
Org. Biomol. Chem., DOI: 10.1039/B903312B
Research Member
Research Rank
1
Research Vol
Vol. 7
Research Year
2009

Evidence that Thienamycin Biosynthesis Proceeds via C-5 Epimerization: ThnE Catalyzes the Formation of (2S,5S)-trans-Carboxymethylproline

Research Abstract
Unusual antibiotic biosynthesis enzymes: The observation that formation of trans-carboxymethylproline (t-CMP) and 6-methyl-t-CMP is catalyzed by ThnE from Streptomyces cattleya using glutamate semi-aldehyde and malonyl- or methylmalonyl-CoA implies the need for a C-5 epimerization step in the biosynthesis of thienamycin and reveals the possibility that a methyl group at C-6 might be introduced at an early stage.
Research Authors
Refaat B. Hamed, Edward T. Batchelar, Jasmin Mecinović, Timothy D. W. Claridge, Christopher J. Schofield
Research Department
Research Journal
ChemBioChem., DOI: 10.1002/cbic.200800652
Research Member
Research Rank
1
Research Vol
Vol. 10
Research Year
2009

Iron-Mediated Cleavage of C-C Bonds in Vicinal Tricarbonyl Compounds in Water

Research Abstract
Three of a kind: Vicinal tricarbonyl compounds undergo C-C cleavage mediated by ferric ions (see scheme). The observed cleavage of ninhydrin and dehydroascorbic acid has relevance for amino acid detection and the metabolism of vitamin C.
Research Authors
Jasmin Mecinović, Refaat B. Hamed, Christopher J. Schofield
Research Department
Research Journal
Angew. Chem. Int. Ed., DOI: 10.1002/anie.200806296
Research Member
Research Rank
1
Research Vol
Vol. 48
Research Year
2009

Thioester Hydrolysis and C-C Bond Formation by Carboxymethylproline Synthase from the Crotonase Superfamily

Research Abstract
Enzyme in action: Labeling studies and the finding that carboxymethylproline synthase catalyzes production of deuterated (2S,5S)-6,6′-dimethyl-trans-carboxymethylproline (3) from dimethylmalonyl-CoA (1) and labeled l-pyrroline-5-carboxylate (2) limit possible mechanisms of C-C bond formation and thioester hydrolysis. A key feature in the catalysis is that intermediates are stabilized by hydrogen bonds in the “oxy-anion hole” of the enzyme (dark curve in scheme).
Research Authors
Edward T. Batchelar, Refaat B. Hamed, Christian Ducho, Timothy D. W. Claridge, Mariola J. Edelmann, Benedikt Kessler, Christopher J. Schofield
Research Department
Research Journal
Angew. Chem. Int. Ed., DOI: 10.1002/anie.200803906
Research Member
Research Rank
1
Research Vol
Vol. 47
Research Year
2008

Mechanisms and Structures of Crotonase Superfamily Enzymes – How Nature Controls Enolate and Oxyanion Reactivity

Research Abstract
Structural and mechanistic studies on the crotonase superfamily (CS) are reviewed with the aim of illustrating how a conserved structural platform can enable catalysis of a very wide range of reactions. Many CS reactions have precedent in the ‘carbonyl’ chemistry of organic synthesis; they include alkene hydration/isomerization, aryl-halide dehalogenation, (de)carboxylation, CoA ester and peptide hydrolysis, fragmentation of β-diketones and C-C bond formation, cleavage and oxidation. CS enzymes possess a canonical fold formed from repeated ββα units that assemble into two approximately perpendicular β-sheets surrounded by α-helices. CS enzymes often, although not exclusively, oligomerize as trimers or dimers of trimers. Two conserved backbone NH groups in CS active sites form an oxyanion ‘hole’ that can stabilize enolate/oxyanion intermediates. The range and efficiency of known CS-catalyzed reactions coupled to their common structural platforms suggest that CS variants may have widespread utility in biocatalysis.
Research Authors
Refaat B. Hamed, Edward T. Batchelar, Clifton I. J., Christopher J. Schofield
Research Department
Research Journal
Cell. Mol. Life Sci., DOI: 10.1007/s00018-008-8082-6
Research Member
Research Rank
1
Research Vol
Vol. 65
Research Year
2008

Current Exposure to Persistent Polychlorinated Biphenyls
(PCBs) and Dichlorodiphenyldichloro-ethylene (p,p-DDE) of
Belgian Students from Food and Dust

Research Authors
Laurence Roosens1, Mohamed Abou-Elwafa Abdallah2,3, Stuart
Harrad2, Hugo Neels1, Adrian Covaci1,4
Research Journal
Environmental Science and Technology
Research Rank
1
Research Vol
vol. 44
Research Year
2010

Analytical and Environmental Aspects of the Flame Retardant
Tetrabromobisphenol-A and its Derivatives

Research Abstract
The present article reviews the available literature on the analytical and environmental aspects of tetrabromobisphenol-A (TBBP-A), a currently intensively used brominated flame retardant (BFR). Analytical methods, including sample preparation, chromatographic separation, detection techniques, and quality control are discussed. An important recent development in the analysis of TBBP-A is the growing tendency for liquid chromatographic techniques. At the detection stage, mass-spectrometry is a well-established and reliable technology in the identification and quantification of TBBP-A. Although interlaboratory exercises for BFRs have grown in popularity in the last 10 years, only a few participating laboratories report concentrations for TBBP-A. Environmental levels of TBBP-A in abiotic and biotic matrices are low, probably due to the major use of TBBP-A as reactive FR. As a consequence, the expected human exposure is low. This is in agreement with the EU risk assessment that concluded that there is no risk for humans concerning TBBP-A exposure. Much less analytical and environmental information exists for the various groups of TBBP-A derivatives which are largely used as additive flame retardants.
Research Authors
Adrian Covaci, Stefan Voorspoels, Mohamed Abou-Elwafa
Abdallah, Tinne Geens, Stuart Harrad, Robin J. Law
Research Journal
Journal of Chromatography A,
Research Rank
2
Research Vol
vol. 1216
Research Year
2009

Causes of Variability in Concentrations and Diastereomer
Patterns of Hexabromocyclo-dodecanes in indoor dust

Research Authors
Stuart Harrad1, Mohamed Abou-Elwafa Abdallah1,2, Adrian
Covaci3
Research Journal
Environment International
Research Rank
2
Research Vol
vol. 35
Research Year
2009

Design, Synthesis and Pharmacophoric Model Building of Novel Substituted Nicotinic Acid Hydrazones with Potential Antiproliferative Activity

Research Abstract
Novel 6-aryl-2-methylnicotinic acid hydrazides 4a-c and their corresponding hydrazones 5a-c and 6a-i were synthesized. X-ray single crystal diffraction of 6h confirmed the chemical structure of hydrazones 6a-i. Antiproliferative activity of the synthetic compounds was investigated against K562 leukemia cell lines. Variable cell growth inhibitory activities were obtained with IC50 range from 24.99 to 66.78 µM where the compound 6c exhibited the maximum activity. Structure activity relationship analysis has been performed and a common pharmacophore model for the synthesized derivatives has been obtained by using the pharmacophore elucidation module of the software MOE. The best model obtained is characterized by two projected locations of potential H-bond donors (F3 and F4) and two Aromatic annotations (F1 and F2).
Research Authors
Hatem A. Abdel-Aziz, Tarek Aboul-Fadl, Abdul-Rahman M. Al-Obaid, Mohamed Ghazzali, Abdullah Al-Dhfyan, Alessandro Contini
Research Journal
Arch Pharm. Res., DOI: 10.1007/s12272-012-0904-2
Research Rank
1
Research Vol
Vol. 35, No. 9
Research Year
2012

Analysis of some antifungal drugs by spectrophotometric and spectrofluorimetric methods in different pharmaceutical dosage forms

Research Authors
PY Khashaba, SR El-Shabouri, KM Emara, AM Mohamed
Research Journal
J. Pharm. Biomed. Anal.
Research Member
Research Rank
1
Research Vol
22
Research Year
2000
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