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Advancements in Luminescent Metal-Organic Cages: Applications and Future Prospects

Research Abstract

Researchers worldwide are developing innovative luminescent systems with exceptional features like high sensitivity. Luminescent frameworks based on aggregation-induced emission (AIE) have emerged as promising candidates for various applications. Over the past decade, porous materials like metal-organic cages (MOCs) incorporating AIE luminogens (AIEgens) have demonstrated exceptional performance. Chirality plays a significant role in specific non-racemic luminescent systems, particularly circularly polarized luminescence (CPL). Chiral organic materials coordinated with metals, including MOCs, have gained importance as they combine organic ligands and coordination-bonded metal centers, enabling the design of novel structures with CPL. These materials have shown exciting potential applications in fields like CPL-OLED, chiral recognition, and sensing. This review article provides an overview of the recent progress in emissive porous materials, specifically MOCs, and their possible applications. Additionally, the review focuses on the recent progress in AIEgen-based cages, CPL-active cages, and non-AIEgen-based cages, their practical applications in sensing and enantioselectivity, and future prospects. Key challenges in AIE-based POCs and MOCs include limited stability, affecting their use in wide-surface thin films, and the need to understand molecular structure and topology impacts. Future efforts should enhance luminescence efficiency and explore applications in chiral sensing, supramolecular assemblies, bioimaging, and optoelectronics, driving innovation in smart materials.

Research Authors
Osama Younis 1,2,*, Xiangyun Xiao 1, Jianxun Yang 3, Kamal I. Aly 4, Etify A. Bakhite 4, and Xinchun Yang
Research Date
Research Department
Research Journal
Journal of Biomolecular Structure and Dynamics
Research Publisher
Scilight Press
Research Rank
Q1
Research Website
https://ojs.sciltp.com/journals/see/article/view/510
Research Year
2024

Novel tetrahydroisoquinolines as DHFR and CDK2 inhibitors: synthesis, characterization, anticancer activity and antioxidant properties

Research Abstract

In this study, we synthesized new 5,6,7,8-tetrahydroisoquinolines and 6,7,8,9-tetrahydrothieno[2,3-c]isoquinolines based on 4-(N,N-dimethylamino)phenyl moiety as expected anticancer and/or antioxidant agents. The structure of all synthesized compounds were confirmed by spectral date (FT-IR, 1H NMR, 13C NMR) and elemental analysis. We evaluated the anticancer activity of these compounds toward two cell lines: A459 cell line (lung cancer cells) and MCF7 cell line (breast cancer cells). All tested compounds showed moderate to strong anti-cancer activity towards the two cell lines. Compound 7e exhibited the most potent cytotoxic activity against A549 cell line (IC50: 0.155 µM) while compound 8d showed the most potent one against MCF7 cell line (IC50: 0.170 µM) in comparison with doxorubicin. In addition, we examined the effect of compounds 7e and 8d regarding the growth of A549 and MCF7 cell lines, employing flow cytometry and Annexin V-FITC apoptotic assay. Our results showed that compound 7e caused cell cycle arrest at the G2/M phase with a 79-fold increase in apoptosis of A459 cell line. Moreover, compound 8d caused cell cycle arrest at the S phase with a 69-fold increase in apoptosis of MCF7 cell line. Furthermore, we studied the activity of these compounds as enzyme inhibitors against several enzymes. Our findings by docking and experimental studies that compound 7e is a potent CDK2 inhibitor with IC50 of 0.149 µM, compared to the Roscovitine control drug with IC50 of 0.380 µM. We also found that compound 8d is a significant DHFR inhibitor with an IC50 of 0.199 µM, compared to Methotrexate control drug with IC50 of 0.131 µM. Evaluation of the antioxidant properties of ten compounds was also studied in comparison with Vitamin C. Compounds 1367c and 8e have higher antioxidant activity than Vitamin C which mean that these compounds can used as potent antioxidant drugs.

Research Authors
Eman M Sayed, Etify A Bakhite, Reda Hassanien, Nasser Farhan, Hanan F Aly, Salma G Morsy, Nivin A Hassan
Research Date
Research Department
Research Journal
BMC chemistry
Research Member
Research Publisher
Springer International Publishing
Research Year
2024

Insight into crystal structures and identification of potential styrylthieno[2,3-b]pyridine-2-carboxamidederivatives against COVID-19 Mpro through structure-guided modeling and simulation approach

Research Abstract

Anti-SARS-CoV-2 drugs are urgently needed to prevent the pandemic and for immunization. Their protease inhibitor treatment for COVID-19 has been used in clinical trials. In Calu-3 and THP1 cells, 3CL SARS-CoV-2 Mpro protease is required for viral expression, replication, and the activation of the cytokines IL-1, IL-6, and TNF-. The Mpro structure was chosen for this investigation because of its activity as a chymotrypsin-like enzyme and the presence of a cysteine-containing catalytic domain. Thienopyridine derivatives increase the release of nitric oxide from coronary endothelial cells, which is an important cell signaling molecule with antibacterial activity against bacteria, protozoa, and some viruses. Using DFT calculations, global descriptors are computed from HOMO-LUMO orbitals; the molecular reactivity sites are analyzed from an electrostatic potential map. NLO properties are calculated, and topological analysis is also part of the QTAIM studies. Both compounds 1 and 2 were designed from the precursor molecule pyrimidine and exhibited binding energies (-14.6708 kcal/mol and −16.4521 kcal/mol). The binding mechanisms of molecule 1 towards SARS-COV-2 3CL Mpro exhibited strong hydrogen bonding as well as Vdw interaction. In contrast, derivative 2 was bound to the active site protein’s active studied that several residues and positions, including (His41, Cys44, Asp48, Met49, Pro52, Tyr54, Phe140, Leu141, Ser144, His163, Ser144, Cys145, His164, Met165, Glu166, Leu167, Asp187, Gln189, Thr190, and GLn192) are critical for the maintenance of inhibitors inside the active pocket. Molecular docking and 100 ns MD simulation analysis revealed that Both compounds 1 and 2 with higher binding affinity and stability toward the SARS-COV-2 3CL Mpro protein. Binding free energy calculations and other MD parameters support the finding.

Research Authors
Youness El Bakri, Basharat Ahmad, Kandasamy Saravanan, Iqrar Ahmad, Etify A. Bakhite, Osama Younis, Safiyyah A. H. Al-Waleedy, Omaima F. Ibrahim, Ayman Nafady, Joel T. Mague & Shaaban K. Mohamed
Research Date
Research Department
Research Journal
Journal of Biomolecular Structure and Dynamics
Research Member
Research Rank
Taylor & Francis
Research Year
2023

Synthesis and characterization of some new thieno[2,3-b]pyridines, thieno[2,3- c][2,7]naphthyridinones and pyrazolo[3,4-c][2,7]naphthyridinones with expected biological activity

Research Abstract

Ethyl 5-cyano-1,6-dihydro-2-methyl-4-styryl-6-thioxonicotinate, its piperidinium pyridine-6-thiolate and 3-
acetyl-5-cyano-1,6-dihydro-2-methyl-4-styryl-6-thioxopyridine were used as starting materials for synthesizing
novel series of S-substituted methylthiopyridine-5-carbonitriles and thieno[2,3-b]pyridines with expected
biological activity. Also, some novel thieno[2,3-c][2,7]naphthyridinones were synthesized. Moreover, 1,7-
diamino-8,9-dihydro-5-methyl-8-phenyl-3H-pyrazolo[3,4-c][2,7]naphthyridine-6(7H)-one was synthesized by
heating ethyl 5-cyano-1,6-dihydro-2-methyl-4-styryl-6-thioxonicotinate with hydrazine hydrate 99% under
neat conditions. The obtained promising aminopyrazolo[3,4-c][2,7]naphthyridine-6(7H)-one was used as a
precursor to get other novel derivatives with expected biological and medicinal importance. Structures of all
new compounds were elucidated by elemental and spectral analysis.

Research Authors
Safiyyah AH Al-Waleedy, Osama Younis, Shams H Abdel-Hafez, Etify A Bakite
Research Date
Research Department
Research Journal
ARKIVOC
Research Year
2024

Introduction to chitosan and its nanocomposites

Research Abstract

Biopolymers are organic substances extracted from natural renewable sources, including plants, animals, and microorganisms. Chitin, the parent source of chitosan (CS), is the second most abundant natural biopolymer available in seafood-processing wastes and fungal cell walls. Pure and conjugated CS nanocomposites are extensively explored in environmental remediation, agriculture, food packaging, and biomedicine due to their affordability, superior heavy metals and dye chelation, biodegradability, flocculating, and film-forming and antimicrobial properties. CS reactive hydroxyl and amino groups enable surface functionalization for enhanced solubility over a wider range of pH, thermal stability, and mechanical strength. This chapter gives an overview on sources, extraction techniques, modifications, properties, and applications of CS.

Research Authors
Ahmed M. Sayed, Sumaiya S. Hasnain, Yousef A. Abdelrady
Research Date
Research Department
Research Journal
Chapter in Chitosan-Based Hybrid Nanomaterials
Research Pages
25-45
Research Publisher
ELSEVIER
Research Website
https://www.sciencedirect.com/science/article/pii/B9780443218910000020
Research Year
2024

Synthesis, crystal structure characterization and computational investigation of new thieno[2,3-b]pyridine derivatives as potent against molecule p38 alpha MAP kinase

Research Abstract

In this study, two new thieno[2,3-b]pyridine derivatives (2 and 3) have been synthesized and characterized by single X-ray diffraction. While compound 2 crystallizes in monoclinic space group P21/c, compound 3 crystallizes in triclinic space group P. These compounds were further subjected to molecular docking simulation with p38 alpha MAP kinase to understand the binding interaction mechanism, in addition to that ADMET analysis was also performed to explore the title compounds to characterize the future drug candidate. To rationalize their structure-activity relationship, a DFT study based on the B3LYP/6-311++G** theoretical level was also done in this study.

Research Authors
Shaaban K Mohamed, Subramani Karthikeyan, Etify A Bakhite, Chin-Hung Lai, Suzan Abulhassan, Islam S Marae, Rashad Al-Salahi, Safiyyah AH Al-Waleedy, Joel T Mague, Youness El Bakri
Research Date
Research Department
Research Journal
Journal of Molecular Structure
Research Publisher
Elsevier
Research Year
2023

Synthesis, X-Ray Crystal Structure, and Identification of Potential Drug Candidate against COVID-19 Main Protease through Structure-Guided Modeling and Simulation Approach

Research Abstract

5-Acetyl-4-(4-methoxyphenyl)-6-methyl-2-thioxo-1,2-dihydropyridine-3-carbonitrile has been successfully prepared by the condensation between the acetylacetone and 2-cyano-3-(4'-methoxyphenyl)thio acrylamide and used to search for a potential drug that could be used to treat COVID-19. The structure was characterized and confirmed by X-ray diffraction analysis, and the crystal packing stability was also performed by the Hirshfeld surface analysis. The chemical reactivity and other properties of the title compound were determined using the density functional theory (DFT) computation and the NBO analysis. Also, the molecular electrostatic potential (MEP) surface was investigated. The CN group was the most nucleophilic site in the entire molecule based on the results. The title compound’s in-silico molecular docking revealed a strong binding potential. Eventually, molecular dynamic (MD) simulation studies are conducted to examine the stability of the molecule inside the receptor cavity. The findings of the in-silico analysis manifested affirmative evidence for the title molecule with good binding, as a potent inhibitor for the main protease of SARS-Cov-2. Hence, it holds the striking potential to serve as a prospective lead compound for designing efficacious drugs against COVID-19.

Research Authors
Elham A Al-Taifi, Hafiz Muzzammel Rehman, Etify A Bakhite, Shaaban K Mohamed, Guan-Yeow Yeap, Chin-Hung Lai, Joel T Mague, Youness El Bakri
Research Date
Research Department
Research Journal
Polycyclic Aromatic Compounds
Research Member
Research Publisher
Taylor & Francis
Research Year
2023

Synthesis, single crystal structure, NBO investigations, and Hirshfeld topology analysis of new ethyl-5,8-dimethyl-6-phenyl-(1H-pyrrol-1-yl)-6,7-dihydrothieno[2,3-c]isoquinoline-2-carboxylate

Research Abstract

Ethyl-5,8-dimethyl-6-phenyl-(1H-pyrrol-1-yl)-6,7-dihydrothieno[2,3-c]isoquinoline-2-carboxylate has been synthesized and single-crystal X-ray diffraction at 170 K and DFT calculations were performed to characterize the reactivity and its electronic structure. The asymmetric unit of the title molecule, C26H24N2O2S, contains two independent molecules differing primarily in the rotational orientations of the pyrrolyl substituent. The two independent molecules are connected by a C—H···O hydrogen bond and in the crystal, two asymmetric units are linked by inversion-related C—H···N hydrogen bonds. The Hirshfeld surface (HS) analysis reveals intermolecular interactions and surface reactivity in a single crystal. The highest fraction of intermolecular contact of 64% can be seen for H⋅⋅⋅H while the lowest contribution of 3.9% was observed for O⋅⋅⋅H contact in crystal packing. The interaction energies between chemical pairs in the crystal structure are investigated by energy framework analysis which indicates repulsion outweighs the coulomb energy and dispersion energy. The performed density functional theory (DFT) investigation has provided us an electronic picture the of structure and fabulous reactivity. The frontier molecular orbital (FMO) analysis reveals a narrow HOMO-LUMO gap (3.81 eV) and global reactivity descriptors also agree with molecular reactivity and remarkable electronic properties. The density of state (DOS) study shows a pictorial representation the of density of states while MESP shows reactive sites (electron-rich) of the compound for electrophilic attack.

Research Authors
Youness El Bakri, Atazaz Ahsin, Shaaban K Mohamed, Etify A Bakhite, Osama Younis, Safiyyah AH Al-Waleedy, Islam S Marae, Joel T Mague
Research Date
Research Department
Research Journal
Journal of Molecular Structure
Research Publisher
Elsevier
Research Year
2023

X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids

Research Abstract

The present study elaborates on the synthesis, crystal structure, and computational studies of two new ionic liquids. In the crystal structure, [C5H12N][C21H14ClN2O2S] (4a), the anions form chains along the a-axis direction through C—H···π(ring) interactions. These are connected into layers that run approximately parallel to the ac plane by a variety of hydrogen bonds. In the compound structure, [C5H12N][C18H15N2O2S] (4b), the two ions are primarily associated by an N—H···N hydrogen bond. In the crystal structure, layers parallel to the bc plane are formed by pairs of C—H···O and N—H···S hydrogen bonds and by C—H···π(ring) interactions. A theoretical study reveals that 4a has lower energy than 4b and is more stable. The NBO and DOS studies further confine the liquids’ structural reactivity and electronic properties. The quantum theory of atoms in a molecule (QTAIM) analysis reveals the important non-covalent interactions among the fragments and charge transfer. The global reactivity descriptors indicate their molecular reactivity relationship with the presence of functional groups. The remarkable polarizability (αo) and hyperpolarizability (βo) values indicate their optical and nonlinear optical (NLO) properties. Furthermore, the analysis performed by CrystalExplorer shows the intermolecular interactions and reactive sites between cations and anions in ionic liquids. The 2D fingerprint plots and Hirshfeld surfaces indicate the major interactions of crystals with neighboring elements in crystal packing. For both compounds, the H···H interactions are significantly higher than the other element interactions.

Research Authors
Youness El Bakri, Shaaban K Mohamed, Atazaz Ahsin, Etify A Bakhite, Islam S Marae, Safiyyah AH Al-waleedy, Joel T Mague, Rashad Al-Salahi
Research Date
Research Department
Research Journal
Crystals
Research Publisher
MDPI
Research Year
2023

Pyridine Derivatives as Insecticides─Part 4: Synthesis, Crystal Structure, and Insecticidal Activity of Some New Thienylpyridines, Thienylthieno[2,3-b]pyridines, and Related Heterocyclic Derivatives

Research Abstract

The reaction of ethyl 5-cyano-2-methyl-4-(thiophen-2-yl)-6-thioxo-1,6-dihydropyridine-3-carboxylate (1) with 2-chloroacetamide or its N-aryl derivatives gave ethyl 6-((2-amino-2-oxoethyl)thio)-5-cyano-2-methyl-4-(thiophen-2-yl) nicotinate (2a) or its N-aryl derivatives 2bf, respectively. Cyclization of 2af into their isomers 3af was carried out by heating in absolute ethanol in the presence of a catalytic amount of sodium ethoxide. The o-aminoamide 3a was reacted with some aryl aldehydes in refluxing ethanol containing a few drops of conc. HCl to afford the corresponding tetrahydropyrimidinones 4ad. The cyclocondensation reaction of 3a with some cycloalkanones such as cyclopentanone and cyclohexanone gave the corresponding spiro compounds 5a,b. The crystal structures of compounds 2a and 2d were determined by single-crystal X–ray diffraction techniques. All new compounds were evaluated for their insecticidal activity toward nymphs and adults of Aphis gossypi.

Research Authors
Etify A Bakhite, Suzan Abuelhassan, Mohamed A Gad, Abdu E Abdel-Rahman, Omaima F Ibrahim, Islam S Marae, Shaaban K Mohamed, Joel T Mague, Ayman Nafady
Research Date
Research Department
Research Journal
Journal of Agricultural and Food Chemistry
Research Publisher
American Chemical Society
Research Year
2023
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