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Prevalence of vitamin D deficiency among patients attending Post COVID-19 follow up clinic: a cross-sectional study

Research Abstract

Post-COVID-19 syndrome
appears to be a multi-organ illness with a
broad spectrum of manifestations, occurring after
even mild acute illness. Limited data currently
available has suggested that vitamin D deficiency
may play a role in COVID-19 cases. However,
to our knowledge, no study has examined
the frequency of vitamin D deficiency in post-
COVID-19 cases and its effect on the symptom
severity. The aim of this study is to both screen
the frequency of vitamin D deficiency in post-
COVID-19 syndrome patients and to study its relation
to persistent symptoms.

Research Authors
AAR Mohamed Hussein, I Galal, MT Amin, AA Moshnib, NA Makhlouf, HA Makhlouf, HK Abd-Elaal, KMS Kholief, DA Abdel Tawab, KA Kamal Eldin, AM Attia, AEA Othman, J Shah, H Aiash
Research Date
Research File
VitD.pdf (519.17 KB)
Research Member
Research Website
https://www.researchgate.net/publication/360371409_Prevalence_of_vitamin_D_deficiency_among_patients_attending_Post_COVID-19_follow-up_clinic_a_cross-sectional_study
Research Year
2022

Evaluation of hepatitis E antigen kinetics and its diagnostic utility for prediction of theoutcomes of hepatitis E virus genotype 1 infection

Research Abstract

HEV-Ag ELISA assay is a reliable diagnostic test in resource-limited areas. HEV genotype 1 (HEV-1) infections are either self-limited or progress to fulminant hepatic failure (FHF) and death if anti-HEV therapy is delayed. Limited data is available about the diagnostic utility of HEV Ag on HEV-1 infections. Herein we aimed to study the kinetics of HEV Ag during HEV-1 infections at different stages, i.e., acute HEV infection, recovery, and progression to FHF. Also, we evaluated the diagnostic utility of this marker to predict the outcomes of HEV-1 infections. Plasma of acute hepatitis E (AHE) patients were assessed for HEV RNA by RT-qPCR, HEV Ag, and anti-HEV IgM by ELISA. The kinetics of HEV Ag was monitored at different time points; acute phase of infection, recovery, FHF stage, and post-recovery. Our results showed that the level of HEV Ag was elevated in AHE patients with a significantly higher level in FHF patients than recovered patients. We identified a plasma HEV Ag threshold that can differentiate between self-limiting infection and FHF progression with 100% sensitivity and 88.89% specificity. HEV Ag and HEV RNA have similar kinetics during the acute phase and self-limiting infection. In the FHF stage, HEV Ag and anti-HEV IgM have similar patterns of kinetics which could be the cause of liver damage. In conclusion, the HEV Ag assay can be used as a biomarker for predicting the consequences of HEV-1 infections which could be diagnostically useful for taking the appropriate measures to reduce the complications, especially for high-risk groups.

Research Authors
Mohamed A El-Mokhtar, Haidi Karam-Allah Ramadan, Muhamad R Abdel Hameed, Ayat M. Kamel, Sahar A. Mandour, Maha Ali, Mohamed AY Abdel-Malek, Doaa M. Abd El-Kareem, Sara Adel, Eman H. Salama, Khaled Abo Bakr Khalaf, Ibrahim M Sayed
Research Date
Research File
Research Member
Research Website
https://www.tandfonline.com/doi/full/10.1080/21505594.2021.1922027
Research Year
2021

A new dissection ladder approach for perforator vessels in infant meningomyelocele soft tissue reconstruction

Research Abstract

Meningomyelocele reconstruction is a lifesaving procedure. A freestyle propeller perforator flap is an ideal option for moderate to large soft tissue meningomyelocele reconstruction. Previous studies that focused on the reliability of perforator flaps for meningomyelocele reconstruction recommended preserving a cuff of soft tissue around the perforators to avoid vasospasm. This method is a very conservative approach in comparison to the recently well-established principles of pedicled perforator flap dissection. In this study, we used a dissection ladder approach. In this method, the pedicle is freed by just islanding the pedicle, skeletonization of the perforator, or further dissection of the perforators beyond the muscles, based on intraoperatively monitoring of the flap.

Research Authors
EL-Shaier Mohammed, Mahmoud S Abdelhamid, Mahmoud Abdelaal, Mohamed Abdel-Tawab, Abdalla Morsy, Awny Askalany
Research Date
Research Department
Research Journal
Annals of Plastic Surgery
Research Member
Research Pages
e31-e38
Research Publisher
LWW
Research Vol
Volume 89, Issue 6
Research Website
https://scholar.google.com/scholar?oi=bibs&cluster=13536696855920447506&btnI=1&hl=en
Research Year
2022

Impact of Bariatric Surgery on Subtilisin/Kexin Type 9 (PCSK9) Gene Expression and Inflammation in the Adipose Tissue of Obese Diabetic Rats

Research Abstract

Bariatric surgery improves dyslipidaemia and reduces body weight, but it remains unclear how bariatric surgery modulates gene expression in fat cells to influence the proprotein convertase subtilisin/kexin type 9 (PCSK-9) and low-density lipoprotein receptor (LDLR) gene expression. The expression of the PCSK9/LDLR/tumor necrosis factor-alpha (TNFα) gene in adipose tissue was measured in two groups of Zucker Diabetic Sprague Dawley (ZDSD) rats after Roux-en-Y gastric bypass (RYGB) surgery or ‘SHAM’ operation. There was lower PCSK9 (p = 0.02) and higher LDLR gene expression (p = 0.02) in adipose tissue in rats after RYGB. Weight change did not correlate with PCSK9 gene expression (r = −0.5, p = 0.08) or TNFα gene expression (r = −0.4, p = 0.1). TNFα gene expression was positively correlated with PCSK9 gene expression (r = 0.7, p = 0.001) but not correlated with LDLR expression (r = −0.3, p = 0.3). Circulating triglyceride levels were lower in RYGB compared to the SHAM group (1.1 (0.8–1.4) vs. 1.5 (1.0–4.2), p = 0.038) mmol/L with no difference in cholesterol levels. LDLR gene expression was increased post-bariatric surgery with the potential to reduce the number of circulating LDL particles. PCSK9 gene expression and TNFα gene expression were positively correlated after RYGB in ZDSD rats, suggesting that the modulation of pro-inflammatory pathways in adipose tissue after RYGB may partly relate to PCSK9 and LDLR gene expression.

Research Authors
Adrian H Heald, Helene A Fachim, Bilal Bashir, Bethanie Garside, Safwaan Adam, Zohaib Iqbal, Akheel A Syed, Rachelle Donn, Carel W Le Roux, Mahmoud Abdelaal, James White, Handrean Soran
Research Date
Research Department
Research Journal
International Journal of Molecular Sciences
Research Member
Research Pages
16978
Research Publisher
MDPI
Research Vol
Volume 24, Issue 23
Research Website
https://scholar.google.com/scholar?oi=bibs&cluster=17637499997801554721&btnI=1&hl=en
Research Year
2023

Early postoperative outcomes of coronary artery bypass grafting patients on-pump versus off-pump

Research Abstract

Coronary artery bypass grafting (CABG) is defined as “open-heart surgery in which a section of a blood vessel is grafted from the aorta to the coronary artery to bypass the blocked section of the coronary artery. Cardiac surgery became more feasible in the late 1930s with the development of the heart-lung machine by Dr. John Gibbon which enabled cardiopulmonary bypass (CPB). This study aimed at comparing early postoperative outcomes between patients undergone CABG on-pump versus off-pump. The study was done on 40 patients, 20 of them was done by on-pump technique and the other 20 was done by off-pump technique. All the patients were transferred to intensive care unit and were observed for the following criteria: Early postoperative bleeding, Cardiac support (Medical or Mechanical), Different types of Arrythmias, Renal function and Hospital stay. Early postoperative bleeding: appears to be more with On-pump technique in the first 3 post operative days. Cardiac support (Medical or Mechanical): No significant difference with both techniques. Different types of Arrythmias: No significant difference with both techniques. Renal function: No significant difference with both techniques except of only one patient needed renal dialysis was done by on-pump technique. Hospital stay: No significant difference with both techniques with mean days of hospital stay for all patients of 8 days. In conclusion, our trial did not show any overall advantage to the use of the off-pump as compared with the on-pump cardiac surgical approach for coronary bypass grafting

Research Authors
Mohamad Zidan Rushdi
Research Date
Research File
Research Journal
Journal of current Medical Research and Practice
Research Publisher
Assiut University, Faculty of Medicine
Research Rank
original article
Research Website
https://jcmrp.journals.ekb.eg/

Improving mitotic cell counting accuracy and efficiency using phosphohistone‐H3 (PHH3) antibody counterstained with haematoxylin and eosin as part of breast cancer grading

Research Abstract

Background

Mitotic count in breast cancer is an important prognostic marker. Unfortunately, substantial inter- and intraobserver variation exists when pathologists manually count mitotic figures. To alleviate this problem, we developed a new technique incorporating both haematoxylin and eosin (H&E) and phosphorylated histone H3 (PHH3), a marker highly specific to mitotic figures, and compared it to visual scoring of mitotic figures using H&E only.

Methods

Two full-face sections from 97 cases were cut, one stained with H&E only, and the other was stained with PHH3 and counterstained with H&E (PHH3–H&E). Counting mitoses using PHH3–H&E was compared to traditional mitoses scoring using H&E in terms of reproducibility, scoring time, and the ability to detect mitosis hotspots. We assessed the agreement between manual and image analysis-assisted scoring of mitotic figures using H&E and PHH3–H&E-stained cells. The diagnostic performance of PHH3 in detecting mitotic figures in terms of sensitivity and specificity was measured. Finally, PHH3 replaced the mitosis score in a multivariate analysis to assess its significance.

Results

Pathologists detected significantly higher mitotic figures using the PHH3–H&E (median ± SD, 20 ± 33) compared with H&E alone (median ± SD, 16 ± 25), P < 0.001. The concordance between pathologists in identifying mitotic figures was highest when using the dual PHH3–H&E technique; in addition, it highlighted mitotic figures at low power, allowing better agreement on choosing the hotspot area (k = 0.842) in comparison with standard H&E (k = 0.625). A better agreement between image analysis-assisted software and the human eye was observed for PHH3-stained mitotic figures. When the mitosis score was replaced with PHH3 in a Cox regression model with other grade components, PHH3 was an independent predictor of survival (hazard ratio [HR] 5.66, 95% confidence interval [CI] 1.92–16.69; P = 0.002), and even showed a more significant association with breast cancer-specific survival (BCSS) than mitosis (HR 3.63, 95% CI 1.49–8.86; P = 0.005) and Ki67 (P = 0.27).

Conclusion

Using PHH3–H&E-stained slides can reliably be used in routine scoring of mitotic figures and integrating both techniques will compensate for each other's limitations and improve diagnostic accuracy, quality, and precision.

Research Authors
Asmaa Ibrahim, Michael S Toss, Shorouk Makhlouf, Islam M Miligy, Fayyaz Minhas, Emad A Rakha
Research Date
Research Department
Research Journal
Histopathology
Research Member
Research Pages
PP.393-406
Research Website
https://doi.org/10.1111/his.14837
Research Year
2023

Characterisation of luminal and triple-negative breast cancer with HER2 Low protein expression

Research Abstract

Background

Breast cancer (BC) expressing low levels of human epidermal growth factor receptor 2 (HER2 Low) is an emerging category that needs further refining. This study aims to provide a comprehensive clinico-pathological and molecular profile of HER2 Low BC including response to therapy and patient outcome in the adjuvant and neoadjuvant settings.

Methods

Two different independent and well-characterised BC cohorts were included. Nottingham cohort (A) (n = 5744) and The Cancer Genome Atlas (TCGA) BC cohort (B) (n = 854). The clinical, molecular, biological and immunological profile of HER2 Low BC was investigated. Transcriptomic and pathway enrichment analyses were performed on the TCGA BC cohort and validated through next-generation sequencing in a subset of Nottingham cases.

Results

Ninety percent of HER2 Low tumours were hormone receptor (HR) positive (HR+), enriched with luminal intrinsic molecular subtype, lacking significant expression of HER2 oncogenic signalling genes and of favourable clinical behaviour compared to HER2 negative (HER2-) BC. In HR+ BC, no significant prognostic differences were detected between HER2 Low and HER2- tumours. However, in HR- BC, HER2 Low tumours were less aggressive with longer patient survival. Transcriptomic data showed that the majority of HR- /HER2 Low tumours were of luminal androgen receptor (LAR) intrinsic subtype, enriched with T-helper lymphocytes, activated dendritic cells and tumour associated neutrophils, while most HR-/HER2- tumours were basal-like, enriched with tumour associated macrophages.

Conclusion

HER2 Low BC is mainly driven by HR signalling in HR+ tumours. HR-/HER2 Low tumours tend to be enriched with LAR genes with a unique immune profile.

Research Authors
Nehal M Atallah, Maria Haque, Cecily Quinn, Michael S Toss, Shorouk Makhlouf, Asmaa Ibrahim, Andrew R Green, Mansour Alsaleem, Catrin S Rutland, Cinzia Allegrucci, Nigel P Mongan, Emad Rakha
Research Date
Research Department
Research Journal
European Journal of Cancer
Research Member
Research Pages
113371
Research Publisher
Pergamon
Research Website
https://www.sciencedirect.com/science/article/pii/S0959804923006731
Research Year
2023

Deciphering the morphology of tumor-stromal features in invasive breast cancer using artificial intelligence

Research Abstract

Tumor-associated stroma in breast cancer (BC) is complex and exhibits a high degree of heterogeneity. To date, no standardized assessment method has been established. Artificial intelligence (AI) could provide an objective morphologic assessment of tumors and stroma, with the potential to identify new features not discernible by visual microscopy. In this study, we used AI to assess the clinical significance of (1) stroma-to-tumor ratio (S:TR) and (2) the spatial arrangement of stromal cells, tumor cell density, and tumor burden in BC. Whole-slide images of a large cohort (n = 1968) of well-characterized luminal BC cases were examined. Region and cell-level annotation was performed, and supervised deep learning models were applied for automated quantification of tumor and stromal features. S:TR was calculated in terms of surface area and cell count ratio, and the S:TR heterogeneity and spatial distribution …

Research Authors
Nehal M Atallah, Noorul Wahab, Michael S Toss, Shorouk Makhlouf, Asmaa Y Ibrahim, Ayat G Lashen, Suzan Ghannam, Nigel P Mongan, Mostafa Jahanifar, Simon Graham, Mohsin Bilal, Abhir Bhalerao, Shan E Ahmed Raza, David Snead, Fayyaz Minhas, Nasir Rajpoot, Em
Research Date
Research Department
Research Journal
Modern Pathology
Research Member
Research Year
2023
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