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Evaluation of tumour infiltrating lymphocytes in luminal breast cancer using artificial intelligence

Research Abstract

Background

Tumour infiltrating lymphocytes (TILs) are a prognostic parameter in triple-negative and human epidermal growth factor receptor 2 (HER2)-positive breast cancer (BC). However, their role in luminal (oestrogen receptor positive and HER2 negative (ER + /HER2-)) BC remains unclear. In this study, we used artificial intelligence (AI) to assess the prognostic significance of TILs in a large well-characterised cohort of luminal BC.

Methods

Supervised deep learning model analysis of Haematoxylin and Eosin (H&E)-stained whole slide images (WSI) was applied to a cohort of 2231 luminal early-stage BC patients with long-term follow-up. Stromal TILs (sTILs) and intratumoural TILs (tTILs) were quantified and their spatial distribution within tumour tissue, as well as the proportion of stroma involved by sTILs were assessed. The association of TILs with clinicopathological parameters and patient outcome was determined.

Results

A strong positive linear correlation was observed between sTILs and tTILs. High sTILs and tTILs counts, as well as their proximity to stromal and tumour cells (co-occurrence) were associated with poor clinical outcomes and unfavourable clinicopathological parameters including high tumour grade, lymph node metastasis, large tumour size, and young age. AI-based assessment of the proportion of stroma composed of sTILs (as assessed visually in routine practice) was not predictive of patient outcome. tTILs was an independent predictor of worse patient outcome in multivariate Cox Regression analysis.

Conclusion

AI-based detection of TILs counts, and their spatial distribution provides prognostic value in luminal early-stage BC patients. The utilisation of AI algorithms could provide a comprehensive assessment of TILs as a morphological variable in WSIs beyond eyeballing assessment.

Research Authors
Shorouk Makhlouf, Noorul Wahab, Michael Toss, Asmaa Ibrahim, Ayat G Lashen, Nehal M Atallah, Suzan Ghannam, Mostafa Jahanifar, Wenqi Lu, Simon Graham, Nigel P Mongan, Mohsin Bilal, Abhir Bhalerao, David Snead, Fayyaz Minhas, Shan E Ahmed Raza, Nasir Rajpo
Research Date
Research Department
Research Journal
British Journal of Cancer
Research Member
Research Year
2023

The Clinical and Biological Significance of Estrogen Receptor-Low Positive Breast Cancer

Research Abstract

Estrogen receptor (ER) status in breast cancer (BC) is determined using immunohistochemistry (IHC) with nuclear expression in ≥1% of cells defined as ER-positive. BC with 1%-9% expression (ER-low-positive), is a clinically and biologically unique subgroup. In this study, we hypothesized that ER-low-positive BC represents a heterogeneous group with a mixture of ER-positive and ER-negative tumor, which may explain their divergent clinical behavior. A large BC cohort (n = 8171) was investigated and categorized into 3 groups: ER-low-positive (1%-9%), ER-positive (≥10%), and ER-negative (<1%) where clinicopathological and outcome characteristics were compared. A subset of ER-low-positive cases was further evaluated using IHC, RNAscope, and RT-qPCR. PAM50 subtyping and ESR1 mRNA expression levels were assessed in ER-low-positive cases within The Cancer Genome Atlas data set. The reliability of image analysis software in assessment of ER expression in the ER-low-positive category was also assessed. ER-low-positive tumors constituted <2% of BC cases examined and showed significant clinicopathological similarity to ER-negative tumors. Most of these tumors were nonluminal types showing low ESR1 mRNA expression. Further validation of ER status revealed that 45% of these tumors were ER-negative with repeated IHC staining and confirmed by RNAscope and RT-qPCR. ER-low-positive tumors diagnosed on needle core biopsy were enriched with false-positive ER staining. BCs with 10% ER behaved similar to ER-positive, rather than ER-negative or low-positive BCs. Moderate concordance was found in assessment of ER-low-positive tumors, and this was not improved by image analysis. Routinely diagnosed ER-low-positive BC includes a proportion of ER-negative cases. We recommend repeat testing of BC showing 1%-9% ER expression and using a cutoff ≥10% expression to define ER positivity to help better inform treatment decisions.

Research Authors
Shorouk Makhlouf , Maryam Althobiti , Michael Toss , Abir A. Muftah , Nigel P. Mongan , Andrew H.S. Lee , Andrew R. Green , Emad A. Rakha
Research Date
Research Department
Research Journal
Modern Pathology
Research Member
Research Pages
100284
Research Publisher
Elsevier
Research Rank
International
Research Vol
36 (10)
Research Year
2023

AI-enabled routine H&E image based prognostic marker for early-stage luminal breast cancer

Research Authors
Noorul Wahab, Michael Toss, Islam M Miligy, Mostafa Jahanifar, Nehal M Atallah, Wenqi Lu, Simon Graham, Mohsin Bilal, Abhir Bhalerao, Ayat G Lashen, Shorouk Makhlouf, Asmaa Y Ibrahim, David Snead, Fayyaz Minhas, Shan E Ahmed Raza, Emad Rakha, Nasir Rajpoo
Research Date
Research Department
Research Journal
npj Precision Oncology
Research Member
Research Pages
122
Research Vol
7
Research Year
2023

Expression, assessment and significance of Ki67 expression in breast cancer: an update

Research Abstract

Ki67 expression is one of the most important and cost-effective surrogate markers to assess for tumour cell proliferation in breast cancer (BC). The Ki67 labelling index has prognostic and predictive value in patients with early-stage BC, particularly in the hormone receptor-positive, HER2 (human epidermal growth factor receptor 2)-negative (luminal) tumours. However, many challenges exist in using Ki67 in routine clinical practice and it is still not universally used in the clinical setting. Addressing these challenges can potentially improve the clinical utility of Ki67 in BC. In this article, we review the function, immunohistochemical (IHC) expression, methods for scoring and interpretation of results as well as address several challenges of Ki67 assessment in BC. The prodigious attention associated with use of Ki67 IHC as a prognostic marker in BC resulted in high expectation and overestimation of its performance. However, the realisation of some pitfalls and disadvantages, which are expected with any similar markers, resulted in an increasing criticism of its clinical use. It is time to consider a pragmatic approach and weigh the benefits against the weaknesses and identify factors to achieve the best clinical utility. Here we highlight the strengths of its performance and provide some insights to overcome the existing challenges.

Research Authors
Ayat Gamal Lashen, Michael S Toss, Suzan Fathy Ghannam, Shorouk Makhlouf, Andrew Green, Nigel P Mongan, Emad Rakha
Research Date
Research Department
Research Journal
Journal of clinical pathology
Research Member
Research Vol
Vol.76, Issue 6
Research Website
https://doi.org/10.1136/jcp-2022-208731
Research Year
2023

Endothelial dysfunction in children with newly diagnosed Graves’ disease

Research Abstract

The most frequent cause of hyperthyroidism in children is Graves’ disease (GD). Vascular endothelium is a specific target of thyroid hormone. The purpose of this study is to assess flow-mediated dilatation (FMD)% and serum von Willebrand factor (vWF) levels in children with newly diagnosed GD to reflect the extent of endothelial dysfunction in those children. In this study, 40 children with newly discovered GD and 40 children who were healthy served as the control group. Both patients and controls had anthropometric assessment, as well as measurements of fasting lipids, glucose, insulin, high-sensitivity C-reactive protein (hs-CRP), TSH, and free thyroxine (FT4 and FT3), thyrotropin receptor antibodies TRAbs and vWF. Noninvasive ultrasound was utilized to quantify the carotid arteries’ intima-media thickness and the brachial artery’s FMD. Patients reported significantly reduced FMD response and greater vWF …

Research Authors
Yasser Gamal, Ahlam Badawy, Ahmed M Ali, Hekma Saad Farghaly, Kotb Abbass Metwalley, Noha Gaber, Momtaz Thabet Allam, Yasser Farouk
Research Date
Research Department
Research Journal
European Journal of Pediatrics
Research Year
2023

Ovarian reserve in adolescent girls with autoimmune thyroiditis

Research Authors
Kotb A Metwalley, Hekma S Farghaly, Deiaaeldin M Tamer, Ahmed M Ali, Mostafa Embaby, Islam F Elnakeeb, Eman B Kamaleldeen
Research Date
Research Department
Research Journal
Archives of Endocrinology and Metabolism
Research Pages
395-400
Research Vol
67
Research Year
2023

Left Internal Thoracic Artery versus Saphenous Vein Grafts to Left Anterior Descending Artery after Isolated Coronary Artery Bypass Surgery

Research Abstract

This study compared perioperative outcomes and long-term survival of saphenous vein grafts (SVGs) versus left internal thoracic artery (LITA) to left anterior descending artery (LAD) in isolated coronary artery bypass graft surgery (CABG).

Methods

In this retrospective, single-centre study, we included patients with primary isolated CABG from January 2001 to July 2022. Baseline demographics were compared between SVG-LAD and LITA-LAD. Univariable and multivariable regressions were performed for predictors of in-hospital death. Propensity score matching was performed for LITA-LAD vs. SVG-LAD. Kaplan–Meier survival curves were generated for comparison of survival. Cox proportional hazards model was used for predictors of survival.

Results

A total of 8237 patients (1602 SVG-LAD/6725 LITA-LAD) were included. Median age was 67.9 years (LITA-LAD; 67.1 years vs. SVG-LAD; 71.7 years, p < 0.01). A total of 1270 pairs of SVG-LAD were propensity-matched to LITA-LAD. In matched cohorts, in-hospital mortality (0.8% vs. 1.6%, LITA-LAD and SVG-LAD respectively; p = 0.07), deep sternal wound infection, new cerebrovascular events, renal replacement therapy and hospital stay >30 days were similar. SVG-LAD did not adversely affect in-hospital mortality (OR; 2.03, CI; 0.91, 4.54, p = 0.08). Median long-term survival was similar between the groups (13.7 years vs. 13.1 years for LITA-LAD and SVG-LAD respectively, log rank p < 0.31). SVG-LAD was not a predictor of adverse long-term survival. (HR; 1.06, 95% CI; 0.92, 1.22, p < 0.40). Long-term survival was better with LITA-LAD for LVEF <30% (log rank p < 0.03 …

Research Authors
Suvitesh Luthra, Hannah Masraf, Mostafa Elbadry Mohamed, Pietro G Malvindi, Davorin Sef, Szabolcs Miskolczi, Theodore Velissaris
Research Date
Research Journal
Life
Research Pages
385
Research Publisher
MDPI
Research Vol
Volume 14, Issue 3
Research Website
https://scholar.google.com.eg/scholar?oi=bibs&cluster=17522142350639642105&btnI=1&hl=en
Research Year
2024

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A meeting between the college administration and quality management with the Student Union and representatives of the various student groups

A meeting between the college administration and quality management with the Student Union and representatives of the various student groups

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