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Feature Descriptors For Nodule Type Classification

Research Abstract
This paper examines feature-based nodule description for the purpose of nodule categorization (i.e., associating detected nodules into types) in low-dose CT scanning (LDCT). The multi-resolution Local Binary Pattern (LBP) and Distance Transform of the edge maps were used to generate the features that describe the texture and shape of common nodules and non-nodules. The LBP of the Distance Transform output were merged together to obtain shape and texture based feature descriptors of the nodules and non-nodules. These features were optimized using PCA and LDA, and the resultant sets were used for classifying/categorization into five categories: juxta-pleural, vascularized, pleural-tail, well-circumscribed and non-nodule. In the categorization process, the combinational shape and texture based feature descriptor resulted in an overall 12% enhancement in results when compared to using shape and texture features separately. These results are encouraging and good indicators for progress towards fully automated detection, segmentation, categorization (into types) and classification (into pathologies) of lung nodules from LDCT scans.
Research Authors
Amal Farag,
Aly A Farag,
Hossam Abdelmunim,
Asem M. Ali,
James Graham,
Salwa Elshazly,
Ahmed Farag,
Sabry Al Mogy,
Mohamed Al Mogy ,
Sahar Al Jafary,
Hani Mahdi,
Robert Falk,
Rebecca Milam
Research Department
Research Journal
Proceedings of 25th International Congress and Exhibition, Computer Assisted Radiology and Surgery
Research Member
Research Rank
3
Research Year
2011

Simultaneous Identification and Tracking of Moving Targets

Research Abstract
This paper describes a framework for simultaneous identification and tracking of moving targets in random media. Video and IR thermal sensors are used to obtain the target signature. Classical Kalman filtering methods are implemented on targets with unknown trajectories. Computer vision methodologies are proposed to design a smart interceptor which identifies the targets based on shape and thermal signatures. The paper also describes a platform for basic studies in tracking of targets using vision-guided robotics. The system enables multiple object tracking and recognition.
Research Authors
Ahmed Shalaby
Asem M. Ali
Amal A. Farag
Research Department
Research Journal
IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops
Research Member
Research Pages
49 - 54
Research Rank
3
Research Year
2011

A new segmentation and registration approach for vertebral body analysis

Research Abstract
To diagnose the osteoporosis accurately, the bone mineral density (BMD) measurements of the vertebral bodies (VBs) are required. In this paper, we propose a new segmentation and registration method in order to assist the BMD measurements and fracture analysis (FA) accurately. In this experiment, image appearance and shape information of VBs are used. Our shape model is required to be registered to the testing image to avoid user interaction(s). Our proposed framework has four phases: i) the detection of vertebral body (VB) using the Matched filter, ii) initial segmentation using the intensity and spatial interaction models, iii) the registration of the shape prior and initially segmented image by matching a vector distance function (VDF), and iv) final segmentation using graph cuts which integrates intensity, spatial interaction and shape prior. Preliminary results show that our new algorithm is very promising and can solve many segmentation and registration problems.
Research Authors
Melih S. Aslan,
Asem M. Ali,
Aly A. Farag,
Hossam Abdelmumin,
Ben Arnold,
Ping Xiang
Research Department
Research Journal
IEEE Computer Society: Proceedings of the 8th IEEE International Symposium on Biomedical Imaging
Research Member
Research Pages
2006-2009
Research Rank
3
Research Year
2011

Solving geometric co-registration problem of multi-spectral remote sensing imagery using SIFT-based features toward precise change detection

Research Abstract
This paper proposes a robust fully automated method for geometric co-registration, and an accurate statistical based change detection technique for multi-temporal high-resolution satellite imagery. The proposed algorithm is based on four main steps: First, multi-spectral scale-invariant feature transform (M-SIFT) is used to extract a set of correspondence points in a pair, or multiple pairs, of images that are taken at different times and under different circumstances, then Random Sample Consensus (RANSAC) is used to remove the outlier set. To insure an accurate matching, uniqueness constrain in the correspondence is assumed. Second, the resulting inliers matched points is used to register the given images. Third, changes in registered images are identified using statistical analysis of image differences. Finally, Markov-Gibbs Random Field (MGRF) is used to model the spatial-contextual information contained in the resulting change mask. Experiments with generated synthetic multiband images, and LANDSAT5 Images, confirm the validity of the proposed algorithm.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Shireen Elhabian,
Aly A. Farag
Research Department
Research Journal
Springer-Verlag: Proceedings of the 7th international conference on Advances in visual computing
Research Pages
607-616
Research Rank
3
Research Vol
2
Research Year
2011

Solving geometric co-registration problem of multi-spectral remote sensing imagery using SIFT-based features toward precise change detection

Research Abstract
This paper proposes a robust fully automated method for geometric co-registration, and an accurate statistical based change detection technique for multi-temporal high-resolution satellite imagery. The proposed algorithm is based on four main steps: First, multi-spectral scale-invariant feature transform (M-SIFT) is used to extract a set of correspondence points in a pair, or multiple pairs, of images that are taken at different times and under different circumstances, then Random Sample Consensus (RANSAC) is used to remove the outlier set. To insure an accurate matching, uniqueness constrain in the correspondence is assumed. Second, the resulting inliers matched points is used to register the given images. Third, changes in registered images are identified using statistical analysis of image differences. Finally, Markov-Gibbs Random Field (MGRF) is used to model the spatial-contextual information contained in the resulting change mask. Experiments with generated synthetic multiband images, and LANDSAT5 Images, confirm the validity of the proposed algorithm.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Shireen Elhabian,
Aly A. Farag
Research Department
Research Journal
Springer-Verlag: Proceedings of the 7th international conference on Advances in visual computing
Research Member
Research Pages
607-616
Research Rank
3
Research Vol
2
Research Year
2011

A passive stereo system for 3D human face reconstruction and recognition at a distance

Research Abstract
In this paper, we propose a front-end framework for 3D human face reconstruction and recognition at a distance. A stereo acquisition system is built and deployed to capture stereo pairs of subjects at different distances. Three main issues are addressed to achieve accurate face reconstruction, which leads to good recognition; Different illumination conditions between the stereo pair due to larger baseline and further distances, where a fast similarity measure based on normalized cross correlation is shown to tackle such problem. Due to the non-convexity nature of a human face, concave regions introduce occluded regions where cubic Splines are used to estimate the disparity. Disparity discontinuities are introduced due to the sparse nature of stereo reconstruction, where surface fitting is performed at prominent facial points. We present our database of 99 subjects at different ranges where reconstruction and recognition results are presented.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Shireen Y. Elhabian,
Ham Rara,
Aly A. Farag
Research Department
Research Journal
IEEE Computer Society: Procedings of Computer Vision and Pattern Recognition Workshops (CVPRW)
Research Pages
17-22
Research Rank
3
Research Year
2012

A passive stereo system for 3D human face reconstruction and recognition at a distance

Research Abstract
In this paper, we propose a front-end framework for 3D human face reconstruction and recognition at a distance. A stereo acquisition system is built and deployed to capture stereo pairs of subjects at different distances. Three main issues are addressed to achieve accurate face reconstruction, which leads to good recognition; Different illumination conditions between the stereo pair due to larger baseline and further distances, where a fast similarity measure based on normalized cross correlation is shown to tackle such problem. Due to the non-convexity nature of a human face, concave regions introduce occluded regions where cubic Splines are used to estimate the disparity. Disparity discontinuities are introduced due to the sparse nature of stereo reconstruction, where surface fitting is performed at prominent facial points. We present our database of 99 subjects at different ranges where reconstruction and recognition results are presented.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Shireen Y. Elhabian,
Ham Rara,
Aly A. Farag
Research Department
Research Journal
IEEE Computer Society: Procedings of Computer Vision and Pattern Recognition Workshops (CVPRW)
Research Member
Research Pages
17-22
Research Rank
3
Research Year
2012

New Approach for Classification of Autistic vs. Typically Developing Brain Using White Matter Volumes

Research Abstract
Autism is a complex developmental disability, characterized by deficits in social interaction, communication skills, range of interests, and occasionally the presence of stereotyped behaviors. Several studies show that changes in brain weight and volume over aging follow a unique trajectory in those affected by the condition (Redcay E, Courchesne E. When is the brain enlarged in autism? A meta-analysis of all brain size reports. Biol Psychiatry 58(1):1-9, 2005). In this work, we develop a robust technique for evaluating the volume of white matter (WM), and use it as the main classification criteria. We perform MRI-based analysis on the brains of 14 autistic and 28 control subjects, male and female between aged 7 to 38 years. The proposed framework consists of several stages. First the entire T1-weighted MRI scans are filtered out from noise using anisotropic diffusion filter. Then, the white matter (WM) is segmented from the skull. The segmentation framework is the search for maximum-a-posterior configurations in a Markov Gibbs Random Field (MGRF) model. After that, a 3D mesh is generated from the segmented WM. Finally, the volume of the 3D mesh is computed using a new algorithm. The experiments show accurate classification results of the proposed framework.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Ahmed A. Farag,
Manuel Casanova,
Aly A. Farag
Research Department
Research Journal
IEEE Computer Society: Proceedings of the Ninth Conference on Computer and Robot Vision
Research Member
Research Pages
284-289
Research Rank
3
Research Year
2012

New Approach for Classification of Autistic vs. Typically Developing Brain Using White Matter Volumes

Research Abstract
Autism is a complex developmental disability, characterized by deficits in social interaction, communication skills, range of interests, and occasionally the presence of stereotyped behaviors. Several studies show that changes in brain weight and volume over aging follow a unique trajectory in those affected by the condition (Redcay E, Courchesne E. When is the brain enlarged in autism? A meta-analysis of all brain size reports. Biol Psychiatry 58(1):1-9, 2005). In this work, we develop a robust technique for evaluating the volume of white matter (WM), and use it as the main classification criteria. We perform MRI-based analysis on the brains of 14 autistic and 28 control subjects, male and female between aged 7 to 38 years. The proposed framework consists of several stages. First the entire T1-weighted MRI scans are filtered out from noise using anisotropic diffusion filter. Then, the white matter (WM) is segmented from the skull. The segmentation framework is the search for maximum-a-posterior configurations in a Markov Gibbs Random Field (MGRF) model. After that, a 3D mesh is generated from the segmented WM. Finally, the volume of the 3D mesh is computed using a new algorithm. The experiments show accurate classification results of the proposed framework.
Research Authors
Mostafa Abdelrahman,
Asem M. Ali,
Ahmed A. Farag,
Manuel Casanova,
Aly A. Farag
Research Department
Research Journal
IEEE Computer Society: Proceedings of the Ninth Conference on Computer and Robot Vision
Research Pages
284-289
Research Rank
3
Research Year
2012
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