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Biological characterization of two bacteriophages infecting Klebsiella pneumoniae

Research Abstract
Abstract. Klebsiella became an increasingly important source of community-acquired and nosocomial infections. Extensive broad-spectrum utilization of antibiotics in hospitalized patients has contributed to both increased carriages of Klebsiella and the development of multidrug-resistant strains. Many of these strains are extremely virulent and show a strong tendency to spread. Bacteriophages, viruses that because bacterial lysis can serve as a useful tool for Klebsiella infection control. In this study, two lytic phages designated as ØKPAS1 and ØKPAS2 infecting multidrug-resistant K. pneumoniae were isolated from sewage samples collected in Assiut, Egypt. Using transmission electron microscopy, the morphology of isolated phages was characterized, and their host range was determined. The morphological analysis revealed that both phages belong to the Podoviridae family. ØKPAS1 has ahead of about 50 ± 5 nm in diameter and a short tail of 20 ± 2 nm in length, while ØKPAS2 has ahead of about 53 ± 5 nm in diameter with a short tail of 19 ± 2 nm in length. ØKPAS1 phage showed a broader host range within genus Klebsiella since it was able to lyse 8 out of 15 different Klebsiella cultures while ØKPAS2 was able to lyse only 5 out of 15. Both phages could not infect bacteria from other genera such as Escherichia coli and Salmonella typhi. The isolated phage ØKPAS1 was able to survive at a temperature up to 50 ᵒC and was infective in pH range between 4.0-9.0, while ØKPAS2 was able to survive at a temperature up to 60 ᵒC and was stable over the pH range of 4,0 to10,0. Both phages were stable in chloroform. One-step growth curves of ØKPAS1 and ØKPAS2 revealed that the latent period was 10 min for either phage, with burst sizes of about 120 and 245 pfu/ml for ØKPAS1 and ØKPAS2, respectively.
Research Authors
Dalia Kamal Rawy1,5, Sameeh Kamal Hemida2*, Ahmed Askora3, Mohamed Ahmed El-Mokhtar4, Naiema Yousef2
Research Journal
Journal of Multidisciplinary Sciences
Research Pages
1-10
Research Publisher
NULL
Research Rank
1
Research Vol
2 (1)
Research Website
NULL
Research Year
2020

Fabrication of Novel Electrochemical Sensors Based on Modification with Different Polymorphs of MnO2 Nanoparticles. Application to Furosemide Analysis in
Pharmaceutical and Urine Samples

Research Abstract
A novel MnO2 nanoparticles/chitosan-modified pencil graphite electrode (MnO2 NPs/CS/PGE) was constructed using two different MnO2 polymorphs (g-MnO2 and 3-MnO2 nanoparticles). X-ray single phases of these two polymorphs were obtained by the comproportionation reaction between MnCl2 and KMnO4 (molar ratio of 5 : 1). The temperature of this reaction is the key factor governing the formation of the two polymorphs. Their structures were confirmed by powder X-ray diffraction (XRD), Fourier transform infrared (FTIR) and energy dispersive X-ray (EDX) analysis. Scanning electron microscopy (SEM)was employed to investigate the morphological shape of MnO2 NPs and the surface of the bare and modified electrodes. Moreover, cyclic voltammetry and electrochemical impedance spectroscopy (EIS)were used for surface analysis of the modified electrodes. Compared to bare PGE, MnO2 NPs/CS/PGE shows higher effective surface area and excellent electrocatalytic activity towards the oxidation of the standard K3[Fe(CN)6]. The influence of different suspending solvents on the electrocatalytic activity of MnO2 was studied in detail. It was found that tetrahydrofuran (THF) is the optimum suspending solvent regarding the peak current signal and electrode kinetics. The results reveal that the modified g-MnO2/ CS/PGE is the most sensitive one compared to the other modified electrodes under investigation. The modified g-MnO2/CS/PGE was applied for selective and sensitive determination of FUR. Under the optimized experimental conditions, g-MnO2/CS/PGE provides a linear response over the concentration range of 0.05 to 4.20 mmol L-1 FUR with a low limit of detection, which was found to be 4.44 nmol L-1 (1.47 ng mL-1) for the 1st peak and 3.88 nmol L-1 (1.28 ng mL-1) for the 2nd one. The fabricated sensor exhibits a good reproducibility and selectivity and was applied successfully for the determination of FUR in its dosage forms and in spiked urine samples with good accuracy and precision.
Research Authors
Mohamed I. Said, Azza H. Rageh, Fatma A. M. Abdel-aal
Research Journal
RSC Adv., DOI: 10.1039/c8ra02978d
Research Pages
pp. 18698–18713
Research Publisher
Royal Society of Chemistry
Research Rank
1
Research Vol
Vol. 8
Research Website
https://pubs.rsc.org/en/content/articlehtml/2018/ra/c8ra02978d
Research Year
2018

Fabrication of Novel Electrochemical Sensors Based on Modification with Different Polymorphs of MnO2 Nanoparticles. Application to Furosemide Analysis in
Pharmaceutical and Urine Samples

Research Abstract
A novel MnO2 nanoparticles/chitosan-modified pencil graphite electrode (MnO2 NPs/CS/PGE) was constructed using two different MnO2 polymorphs (g-MnO2 and 3-MnO2 nanoparticles). X-ray single phases of these two polymorphs were obtained by the comproportionation reaction between MnCl2 and KMnO4 (molar ratio of 5 : 1). The temperature of this reaction is the key factor governing the formation of the two polymorphs. Their structures were confirmed by powder X-ray diffraction (XRD), Fourier transform infrared (FTIR) and energy dispersive X-ray (EDX) analysis. Scanning electron microscopy (SEM)was employed to investigate the morphological shape of MnO2 NPs and the surface of the bare and modified electrodes. Moreover, cyclic voltammetry and electrochemical impedance spectroscopy (EIS)were used for surface analysis of the modified electrodes. Compared to bare PGE, MnO2 NPs/CS/PGE shows higher effective surface area and excellent electrocatalytic activity towards the oxidation of the standard K3[Fe(CN)6]. The influence of different suspending solvents on the electrocatalytic activity of MnO2 was studied in detail. It was found that tetrahydrofuran (THF) is the optimum suspending solvent regarding the peak current signal and electrode kinetics. The results reveal that the modified g-MnO2/ CS/PGE is the most sensitive one compared to the other modified electrodes under investigation. The modified g-MnO2/CS/PGE was applied for selective and sensitive determination of FUR. Under the optimized experimental conditions, g-MnO2/CS/PGE provides a linear response over the concentration range of 0.05 to 4.20 mmol L-1 FUR with a low limit of detection, which was found to be 4.44 nmol L-1 (1.47 ng mL-1) for the 1st peak and 3.88 nmol L-1 (1.28 ng mL-1) for the 2nd one. The fabricated sensor exhibits a good reproducibility and selectivity and was applied successfully for the determination of FUR in its dosage forms and in spiked urine samples with good accuracy and precision.
Research Authors
Mohamed I. Said, Azza H. Rageh, Fatma A. M. Abdel-aal
Research Journal
RSC Adv., DOI: 10.1039/c8ra02978d
Research Pages
pp. 18698–18713
Research Publisher
Royal Society of Chemistry
Research Rank
1
Research Vol
Vol. 8
Research Website
https://pubs.rsc.org/en/content/articlehtml/2018/ra/c8ra02978d
Research Year
2018

Effects of Mobile Radiation on The Memory of Different ages Male R

Research Abstract
Abstract : Due to the association of noise pollution and Psychological and physiological diseases, the main aim of this work is to determine the effects of mobile phone radiation on memory of the different ages male rats. In our study male Wistar rats were randomly divided into 4 (control and exposed receiving) groups of 10 rats in each. Memory level was measured in animals using Eight arm Maze and passive avoidance tests. Data were statistically analyzed and compared between groups using ANOVA and T-Test. The results indicate that memory level was decreased in rats exposed to mobile phone radiation compared to control rats.
Research Authors
Sofia Safwat ,G. S. Hassan , Marwa A. Ahmed , M. Y. Mekky
Research Journal
Assiut University Journal of Physics
Research Pages
14 pp
Research Publisher
Faculty of Science, Assiut University
Research Rank
2
Research Vol
Vol.48,No. 2
Research Website
NULL
Research Year
2019

Effects of Mobile Radiation on The Memory of Different ages Male R

Research Abstract
Abstract : Due to the association of noise pollution and Psychological and physiological diseases, the main aim of this work is to determine the effects of mobile phone radiation on memory of the different ages male rats. In our study male Wistar rats were randomly divided into 4 (control and exposed receiving) groups of 10 rats in each. Memory level was measured in animals using Eight arm Maze and passive avoidance tests. Data were statistically analyzed and compared between groups using ANOVA and T-Test. The results indicate that memory level was decreased in rats exposed to mobile phone radiation compared to control rats.
Research Authors
Sofia Safwat ,G. S. Hassan , Marwa A. Ahmed , M. Y. Mekky
Research Journal
Assiut University Journal of Physics
Research Pages
14 pp
Research Publisher
Faculty of Science, Assiut University
Research Rank
2
Research Vol
Vol.48,No. 2
Research Website
NULL
Research Year
2019

Analyzing the Energy Consumption of Sequential and Parallel Metaheuristics

Research Abstract
Real-life problems are usually time-consuming since they require solving large instances of NP-hard problems. Exact search methods in most of the cases cannot afford practical solutions for such problems. Metaheuristics arise as promising solvers for these problems, by obtaining acceptable solutions in terms of quality and computational cost in a reasonable time bound. Nowadays, energy efficiency is also taken into consideration during the design of new algorithms because of the million times that algorithms run on labs and computation centers. This work presents two novel experiments for investigating the numerical performance and energy efficiency of the sequential and parallel metaheuristics. The main aim of this study is to analyze the energy consumption of three well-known and commonly used metaheuristics (Genetic Algorithm, Variable Neighborhood Search, and Simulated Annealing) and their parallel versions. The discussions reveal the differences/similarities between the different sequential/parallel algorithms, which include trajectory-based and population-based metaheuristics so that this study is useful for the future design of energy-aware algorithms.
Research Authors
Amr Abdelhafez ; Gabriel Luque ; Enrique Alba
Research Journal
2019 International Conference on High Performance Computing & Simulation (HPCS)
Research Pages
NULL
Research Publisher
IEEE
Research Rank
3
Research Vol
NULL
Research Website
https://doi.org/10.1109/HPCS48598.2019.9188170
Research Year
2019

A component-based study of energy consumption for sequential and parallel genetic algorithms

Research Abstract
Recently, energy efficiency has gained attention from researchers interested in optimizing computing resources. Solving real-world problems using optimization techniques (such as metaheuristics) requires a large number of computing resources and time, consuming an enormous amount of energy. However, only a few and limited research efforts in studying the energy consumption of metaheuristics can be found in the existing literature. In particular, genetic algorithms (GAs) are being used so widely to solve a large range of problems in scientific and real-world problems, but hardly found explained in their internal consumption behavior. In the present article, we analyze the energy consumption behavior of such techniques to offer a useful set of findings to researchers in the mentioned domains. We expand our study to include several algorithms and different problems and target the components of the algorithms so that the results are still more appealing for researchers in arbitrary domains of application. Our experiments on the sequential GAs show the controlling role of the fitness operator on energy consumption and also reveal possible energy hot spots in GAs operations, such as mutation operator. Further, our distributed evaluations besides a statistical analysis of the results demonstrate that the communication scheme could highly affect the energy consumption of the parallel evaluations of the GAs.
Research Authors
Amr Abdelhafez, Enrique Alba & Gabriel Luque
Research Journal
The Journal of Supercomputing
Research Pages
6194–6219
Research Publisher
NULL
Research Rank
1
Research Vol
75
Research Website
https://doi.org/10.1007/s11227-019-02843-4
Research Year
2019

Speed-up of synchronous and asynchronous distributed Genetic Algorithms: a first common approach on multiprocessors

Research Abstract
Genetic Algorithms (GAs) are being used to solve a wide range of problems in real world problems, and it is important to study their implementations to improve the solution quality and reduce the execution time. Designing parallel (e.g., distributed) GAs is one research line to do so. In distributed GAs, every individual represents a tentative solution. Individuals are split (and sparsely communicated) over many islands, with genetic operators being applied locally in each island. In addition, in order to maintain diversity and reduce the number of the evaluations, a migration operator is used to enhance their behavior. This article presents a basic study on the speed-up of parallel GAs where a common approach is followed to better understand synchronous and asynchronous versions together. We analyze the behavior of GAs over a homogeneous multiprocessor system. We will report results showing linear and even super linear speed-up in both cases of study. The parallel performance of the synchronous and asynchronous versions is very good in a multiprocessor computer, both in terms of time and solution quality. Besides, a statistical analysis of the algorithms clearly proves that both cases have a similar numerical behavior over a homogeneous parallel system.
Research Authors
Amr Abdelhafez, Enrique Alba
Research Journal
2017 IEEE Congress on Evolutionary Computation (CEC)
Research Pages
2677-2682
Research Publisher
IEEE
Research Rank
3
Research Vol
NULL
Research Website
https://ieeexplore.ieee.org/abstract/document/7969632
Research Year
2017

Performance analysis of synchronous and asynchronous distributed genetic algorithms on multiprocessors

Research Abstract
Because of their effectiveness and flexibility in finding useful solutions, Genetic Algorithms (GAs) are very popular search techniques for solving complex optimization problems in scientific and industrial fields. Parallel GAs (PGAs), and especially distributed ones have been usually presented as the way to overcome the time-consuming shortcoming of sequential GAs. In the case of applying PGAs, we can expect better performance, the reason being the exchange of knowledge during the parallel search process. The resulting distributed search is different compared to what sequential panmictic GAs do, then deserving additional studies. This article presents a performance study of three different PGAs. Moreover, we investigate the effect of synchronizing communications over modern shared-memory multiprocessors. We consider the master-slave model along with synchronous and asynchronous distributed GAs
Research Authors
Amr Abdelhafez, Enrique Alba, Gabriel Luque
Research Journal
Swarm and Evolutionary Computation
Research Pages
147-157
Research Publisher
Elsevier
Research Rank
1
Research Vol
49
Research Website
https://doi.org/10.1016/j.swevo.2019.06.003
Research Year
2019
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