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Advanced backcross-quantitative trait loci mapping of grain yield, heading date, and their stability parameters in barley across multienvironmental trials in Egypt

Research Abstract

Exploring the relationship between grain yield and heading date traits and their
stability parameters at phenotypic, genetic, and molecular levels is the milestone for
improving yield and adaptation in barley. We evaluated a mapping population
comprising 298 doubled haploid lines in multienvironmental trials in Egypt.
Composite interval mapping revealed 35 quantitative trait loci (QTLs) with four
pleiotropic QTLs. A major QTL bPb-9110 (140.3 cM on 3H) with a peak LOD greater
than 24 was found to be associated with the stability statistics bi and R2 of heading
date. Additionally, the marker bPb-1213 on 1H was correlated to heading date, grain
yield, and the statistic bi (GYP). We also found that the gene HvFT4 (2H, 66 cM) had
a significant impact on the heading date due to the presence of exotic alleles. This
gene was closely linked to the photoperiod Ppd-H1 gene by 24.9 cM, and both genes
play a major role in regulating flowering time in barley. Our results provide evidence
that stability statistics pinpoint genetic control and appear promising for
marker-assisted selection.

Research Authors
Mohammed A. Sayed; Mohamed B. Ali; Bakry A. Bakry; Ashraf N. El-Sadek; Jens Léon
Research Date
Research Department
Research Journal
Plant Breeding
Research Pages
1042-1057
Research Publisher
Wiley-Blackwell
Research Vol
140 (6)
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1111/pbr.12974
Research Year
2021

Role of clay in detoxification of aflatoxin B1 in growing Japanese quail with reference to gender

Research Abstract

The present study investigated the influence of the quail diet polluted with aflatoxin B1 (AFB1) and its detoxification by using clay as a feed additive on the growth performance and some blood biochemical components of growing Japanese quail with reference to sex. A total number of 120 Japanese quail chicks (1 week old), was randomly divided into 10 groups (24 chicks/ group). A 5 × 2 factorial arrangement experiment was performed and included five levels of AFB1 (0 ppm, 1 mg/kg AFB1, 1 mg/kg AFB1 + 1% clay, 2 mg/kg AFB1 and 2 mg/kg AFB1 + 1% clay) and two sexes. Birds fed with aflatoxin free diet had significantly (P ≤ 0.05 and 0.01) higher final live body weight, weight gain and lower mortality rate than the other groups. Addition of 1% clay significantly (P ≤ 0.05 and 0.01) improved the growth performance traits and diminished aflatoxin effect when compared to groups without the addition of clay. Obtained results indicated significant (P ≤ 0.05) differences between the two sexes in their response to aflatoxicosis in the final live body weight and weight gain. Our results showed significant (P ≤ 0.01) changes in all blood biochemicals (total protein, albumin, globulin, total cholesterol, creatinine, uric acid) and activities of serum enzymes studied due to the toxicity of AFB1. Conclusively, the consumption of polluted diets with AFB1 caused deleterious effects on the growth performance and blood biochemicals components of Japanese quail, while dietary addition of natural clay to the diet of growing Japanese quail caused beneficial effects.

Research Authors
Khalid M Mahrose, Izabela Michalak, Mohamed Farghly, Abdelmotaleb Elokil, Runxiang Zhang, Tugay Ayaşan, Aml Mekawy, Sarfaraz Fazlani
Research Date
Research Department
Research Journal
Veterinary Research Communications
Research Member
Research Pages
363–371
Research Publisher
Springer Netherlands
Research Rank
1
Research Vol
45
Research Year
2021

Evaluation the Gross Chemical Composition of Camel Milk Collected from Different Regions in Egypt

Research Abstract

In this study, the physicochemical characteristics of camel's milk (CM) obtained from different arid and semi-arid regions in Egypt, including Aswan, Luxor, and Shalateen, were investigated. No significant differences were recorded in pH values. Significant differences were recorded in the titratable acidity (%). The milk samples collected from Luxor area had the highest value. Significant differences were recorded in total solids (TS) content between the camel milk samples. The camel milk samples collected from Aswan area have the highest values in fat, protein, and ash content. For the Luxor, Aswan, and Shalateen regions, antioxidant activity (%) and total phenolic compound content were 77.31, 69.14, 73.94%, and 1.48, 1.60, and 1.74 mg/100 g, respectively. In raw camel milk (CM), vitamin C content was recorded at 24.9, 26.03, and 21.92 mg/100g for the Luxor, Aswan, and Shalateen regions, respectively. On the other hand, the results were 13.69, 14.31, and 12.05 for the Luxor, Aswan, and Shalateen regions, respectively, after the pasteurization process. The amounts of K and Na were 1132, 1321, 1217, and 574, 702, and 621 mg/100g for the Luxor, Aswan, and Shalateen regions, respectively

Research Authors
E.M. Elkot, W.F, Tammam, A.A., Khalil, O.S., Khalil
Research Date
Research File
653.pdf (761.31 KB)
Research Journal
J. of Food and Dairy Sci.
Research Member
Research Pages
315-318.
Research Publisher
Faculty of Agriculture, Mansoura University, Egypt
Research Vol
12
Research Year
2021

Identification of QTLs involved in cold tolerance in sweet × field corn

Research Abstract

Sweet corn was originally due to the recessive allele sugary1 (su1). Sweet corn breeders frequently use field corn genotypes for broadening the narrow genetic base of sweet corn but they have to deal with the reduced viability of su1 plants within some field corn genetic backgrounds. Emergence and seedling vigor are the most critical traits affecting the viability of su1 plants. In two populations of RILs involving sweet corn inbred lines developed from B73 × P39 and B73 × IL14 h, a net natural selection was revealed acting against the su1 allele. In the field, 27 QTLs were detected for the RILs released from B73 × P39 and 24 QTLs for those from B73 × IL14 h, while different numbers of QTLs were detected in growth chamber trials, depending on the seed origin and evaluation conditions that were not consistent across genotypes or environments. The viability of su1 is under genetic and environmental controls with significant additive effects that are probably due to multiple genes with minor contribution. There are specific genes involved in the mutant viability and these genes depend not only on the mutant and the environment but also on the genetic background into which the mutant is introduced. Some of the QTLs identified in this study explained large proportions of variance and could be used by sweet corn breeders in breeding new genotypes from field × sweet corn crosses.

Research Authors
Mohamed Allam, Pedro Revilla, Abderrahmane Djemel, William F. Tracy & Bernardo Ordás
Research Date
Research Department
Research Journal
Euphytica
Research Member
Research Pages
353–365
Research Publisher
SPRINGER
Research Vol
208
Research Website
https://link.springer.com/article/10.1007/s10681-015-1609-7
Research Year
2015

A Predictive Study of the Redistribution of Some Bread Wheat Genotypes in Response to Climate Change in Egypt

Research Abstract

Climate change and global warming have become the most significant challenges to the agricultural production worldwide, especially in arid and semiarid areas. The main purpose of plant breeding programs now is to produce a genetically wide range of genotypes that can withstand the adverse effects of climate change. Moreover, farmers have to reallocate their cultivars due to their ability to tolerate unfavorable conditions. During this study, two field experiments and climate analysis based on 150 years of data are conducted to reallocate some genotypes of bread wheat in respect to climate change based on their performance under drought stress conditions. Climatic data indicate that there is an increase in temperature over all Egyptian sites coupled with some changes in rain amount. Among the tested cultivars, cultivar Giza 160 was the perfect one, while cultivar Masr 03 was the weakest one. Susceptibility indices are a good tool for discovering the superior genotypes under unfavorable conditions and, interestingly, some of the cultivars with high performance were among the superior cultivars in more than one of the tested traits in this study. Finally, combining the climatic data and the experimental data, we can conclude that cultivars Giza 160 and Sakha 94 are suitable for growning in zones with harsh environments, such as the eastern desert and southern Egypt, while cultivars Gemmeza 11, Sahel 01, Sakha 98, Sids 12, and Sakha 93 are suitable for growning in zones with good growing conditions, such as the Nile Delta region and northern Egypt

Research Authors
Alhosein Hamada, Mohamed Tharwat Said, Khaled M. Ibrahim, Mohamed Saber and Mohammed Abdelaziz Sayed
Research Date
Research Department
Research Pages
113-133
Research Publisher
Multidisciplinary Digital Publishing Institute
Research Rank
3.417
Research Vol
12 (1) 113
Research Website
https://www.mdpi.com/2073-4395/12/1/113/htm
Research Year
2022

Differentially Expressed Proteins Implicated in Grain Filling at Early Ripening Stage of Rice: A Proteomic Study

Research Abstract

Grain filling is a pivotal grain weight determinant factor and has a great impact on rice yield potential. High grain weight was attributed to a high grain-filling rate. Proteomic analysis during the early ripening stage of rice grains from two cultivars that possess contrasting phenotypes in grain-filling rates was performed to identify proteins associated with high grain-filling rates. Two hundred and nineteen differentially expressed proteins (DEPs) were identified from the grain of two selected cultivars. We observed six more abundant enzymes involved in starch and sucrose metabolism during rice grain filling in the high grain-filling rate cultivar X42. Gene ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that most of the identified DEPs during grain filling were implicated in physiological and biochemical processes. These processes include carbohydrate metabolism, energy metabolism, secondary metabolites metabolism, and amino acids metabolism. Besides, most of those identified DEPs are differentially expressed in the two rice cultivars during grain filling. These findings indicate the essential roles of DEPs in rice grain development. During the grain-filling stage, starch, sucrose, fatty acids, and amino acids biosynthesis were more active and their metabolisms were also significantly enriched. Protein–protein interactions indicate the implication of proteins in several biological processes, for instance, carbohydrate metabolism, fatty acid metabolism, energy metabolism, and secondary metabolites biosynthesis. Data from our study provided valuable information about carbohydrate and amino acids biosynthesis, transport, and their metabolism in two genotypically grain filling.

Research Authors
Jiana Chen, Fangbo Cao, Mohammed Albaqami, Min Huang, Salah F. Abou-Elwafa
Research Date
Research Department
Research Journal
Journal of Plant Growth Regulation
Research Pages
1-16
Research Publisher
Springer
Research Rank
Q1
Research Website
https://link.springer.com/article/10.1007/s00344-021-10514-z
Research Year
2021

ZmERF21 directly regulates hormone signaling and stress‐responsive gene expression to influence drought tolerance in maize seedlings

Research Abstract

Drought stress adversely impacts crop development and yield. Maize frequently encounters drought stress during its life cycle. Improvement of drought tolerance is a priority of maize breeding programs. Here, we identified a novel transcription factor encoding gene, APETALA2 (AP2)/Ethylene response factor (ERF), which is tightly associated with drought tolerance in maize seedlings. ZmERF21 is mainly expressed in the root and leaf and it can be highly induced by polyethylene glycol treatment. Genetic analysis showed that the zmerf21 mutant plants displayed a reduced drought tolerance phenotype, accompanied by phenotypical and physiological changes that are commonly observed in drought conditions. Overexpression of ZmERF21 in maize significantly increased the chlorophyll content and activities of antioxidant enzymes under drought conditions. RNA-Seq and DNA affinity purification sequencing analysis further revealed that ZmERF21 may directly regulate the expression of genes related to hormone (ethylene, abscisic acid) and Ca signaling as well as other stress-response genes through binding to the promoters of potential target genes. Our results thereby provided molecular evidence of ZmERF21 is involved in the drought stress response of maize.

 
Research Authors
Zhiyong Wang, Xiang Zhao, Zhenzhen Ren, Salah Fatouh Abou‐Elwafa, Xiaoyu Pu, Yingfang Zhu, Dandan Dou, Huihui Su, Haiyang Cheng, Zhixue Liu, Yanhui Chen, Ertao Wang, Ruixin Shao, Lixia Ku
Research Date
Research Department
Research Journal
Plant, Cell & Environment
Research Pages
1-17
Research Publisher
Wiley Online Library
Research Rank
Q1
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1111/pce.14243
Research Year
2021

ZmCCT regulates photoperiod-dependent flowering and response to stresses in maize

Research Abstract

Background

Appropriate flowering time is very important to the success of modern agriculture. Maize (Zea mays L.) is a major cereal crop, originated in tropical areas, with photoperiod sensitivity. Which is an important obstacle to the utilization of tropical/subtropical germplasm resources in temperate regions. However, the study on the regulation mechanism of photoperiod sensitivity of maize is still in the early stage. Although it has been previously reported that ZmCCT is involved in the photoperiod response and delays maize flowering time under long-day conditions, the underlying mechanism remains unclear.

Results

Here, we showed that ZmCCT overexpression delays flowering time and confers maize drought tolerance under LD conditions. Implementing the Gal4-LexA/UAS system identified that ZmCCT has a transcriptional inhibitory activity, while the yeast system showed that ZmCCT has a transcriptional activation activity. DAP-Seq analysis and EMSA indicated that ZmCCT mainly binds to promoters containing the novel motifs CAAAAATC and AAATGGTC. DAP-Seq and RNA-Seq analysis showed that ZmCCT could directly repress the expression of ZmPRR5 and ZmCOL9, and promote the expression of ZmRVE6 to delay flowering under long-day conditions. Moreover, we also demonstrated that ZmCCT directly binds to the promoters of ZmHY5ZmMPK3ZmVOZ1 and ZmARR16 and promotes the expression of ZmHY5 and ZmMPK3, but represses ZmVOZ1 and ZmARR16 to enhance stress resistance. Additionally, ZmCCT regulates a set of genes associated with plant development.

Conclusions

ZmCCT has dual functions in regulating maize flowering time and stress response under LD conditions. ZmCCT negatively regulates flowering time and enhances maize drought tolerance under LD conditions. ZmCCT represses most flowering time genes to delay flowering while promotes most stress response genes to enhance stress tolerance. Our data contribute to a comprehensive understanding of the regulatory mechanism of ZmCCT in controlling maize flowering time and stress response.

Research Authors
Huihui Su, Jiachen Liang, Salah Fatouh Abou-Elwafa, Haiyang Cheng, Dandan Dou, Zhenzhen Ren, Jiarong Xie, Zhihui Chen, Fengran Gao, Lixia Ku, Yanhui Chen
Research Date
Research Department
Research Journal
BMC Plant Biology
Research Pages
1-15
Research Publisher
Springer
Research Rank
Q1
Research Vol
21
Research Website
https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03231-y
Research Year
2021

Aerenchyma formation in the root of leaf‐vegetable sweet potato: Programmed cell death initiated by ethylene‐mediated H2O2 accumulation

Research Abstract

Sweet potato, commonly planted in Southeast Asia and South America with abundant rainfall, often suffers from waterlogging. The aerenchyma formation in roots is an effective way for plants to facilitate gas exchange. In the present study, tolerant and sensitive varieties, respectively, designated NC1 and C211, were evaluated under water oxygen content at 2.0 mg·L−1 (hypoxia treatment) and 8.0 mg·L−1 (control). The results showed that NC1 variety has a relatively higher root growth rate under low oxygen condition. In NC1 plants, aerenchyma was observed in the mid-section of the main adventitious root and spread to the proximal and distal ends, forming a complete channel in the cortex. However, in C211 plants, the aerenchyma occurred relatively later and could not turn into a whole channel. Ethylene synthesis-related (ACS1ACS4ACS5, etc.) and signal transduction-related (ETR1ERS1EIN2, etc.) genes were upregulated in the NC1 plants and led to changes in the reactive oxygen species-related genes (RBOHASODCAT, etc.) and enzyme activities. It was found that programmed cell death was induced by H2O2 accumulation. A regulatory model of lysigenous aerenchyma formation in the root of sweet potato was constructed. Our study enriches the understanding of the mechanisms of the aerenchyma formation in plants.

 
Research Authors
Rui Pan, Hui Han, Milca Banda Medison, Salah Fatouh Abou‐Elwafa, Yi Liu, Xinsun Yang, Wenying Zhang
Research Date
Research Department
Research Journal
Physiologia Plantarum
Research Pages
2361-2375
Research Publisher
Wiley Online Library
Research Rank
Q1
Research Vol
173
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1111/ppl.13587
Research Year
2021

Effect of Pre- and Post-harvest Treatments on Quality and Storability of "Manfalouty" Pomegranates under Room Temperature

Research Abstract

This study was carried out during 2011 and 2012 seasons on "Manfalouty" pomegranate cv. grown at the experimental orchard of Pomology Department, Faculty of Agriculture, Assiut University. The objectives of this study were examining the effects of pre-harvest spray with CaCl2 (4%) and GA3 (100 ppm) as well as post-harvest treatments with jasmine oil (2.5 cm3 /L), olive oil (2.5 cm3 /L), fiber gard (20 cm3 /L) and wrapping individually fruit with food polyolefin stretch as an improving effect in physicochemical characteristics of "Manfalouty" pomegranate cv. during storage under room temperature (22+5°C). The experiments were set up on split-plot arrangements in complete randomized block design (CRBD), with three replicates, 20 fruits each. According to the obtained results of this study, it could be deduced that pre-harvest spray with GA3 (100 ppm) gave in general, the best results on improving physical and chemical characteristics, followed by CaCl2 (4%) during the two growth seasons, as well as wrapping individually fruits with food polyolefin stretch gave the best quality during shelf-life period, followed by dipping fruits in both jasmine oil or olive oil and fiber gard during fruit storage under room temperature. Therefore, the authors recommended with wrapping individually fruits to keep fruits with good quality during fruit storage under room temperature.

Research Authors
Mostafa, F.M.A.1 ; A.A.B. Masoud1 ; R.A. Ibrahim1 ; Fatma E. Ibraheem2 and Nagwa M. Omar2 1 Pomology Dept., Faculty of Agricultural, Assiut University, Assiut, Egypt. 2Agricultural Research Center, Cairo, Egypt.
Research Date
Research Pages
(76-96)
Research Publisher
Assiut J. Agric. Sci.,
Research Vol
(49) No.(3)
Research Year
2018
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